Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12n09f
(585 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_1010 - 13194002-13194339,13194421-13194573,13194661-131948... 149 2e-36
07_03_1578 + 27872636-27872840,27872928-27873175,27873215-278732... 118 7e-33
03_02_0999 - 13105030-13105434,13105716-13105850,13105933-131061... 80 1e-15
03_02_0998 - 13097675-13098079,13098307-13098441,13098522-130987... 80 1e-15
12_02_1165 + 26633371-26633679,26635183-26635276,26635732-266358... 34 0.072
09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,851... 30 1.2
04_03_0055 + 10299539-10299703,10300042-10300746,10301025-103011... 29 2.1
04_01_0275 + 3648866-3649951 29 2.7
07_01_0103 - 779554-780434,780542-780791 28 6.3
11_06_0190 - 21071831-21071947,21072164-21072259,21072883-210729... 27 8.3
05_06_0075 - 25379820-25380776,25380851-25381179,25381255-25381453 27 8.3
01_06_0439 + 29398980-29399190,29399910-29400010 27 8.3
>03_02_1010 -
13194002-13194339,13194421-13194573,13194661-13194809,
13194932-13195184,13195282-13195469,13195684-13195841,
13196093-13196307,13196410-13196614
Length = 552
Score = 149 bits (361), Expect = 2e-36
Identities = 78/162 (48%), Positives = 101/162 (62%), Gaps = 2/162 (1%)
Frame = +3
Query: 105 YVLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIVALENI 284
Y+LFE ++G+ LF +E+ + V SV DL RF V L AF P SA+ AL
Sbjct: 4 YLLFESASGYGLFHAYGIDEIGQSVDAVRASVVDLDRFGKAVKLAAFTPFSSAVDALNQC 63
Query: 285 NAVSEGILPEDLNLFLEGGLPKRK--KRSKCTLGVLDPKLGAAISEALEIQCTHTGAVPE 458
NA+SEGI+ ++L FLE LPK K K++K +LGV++PK+G+ ISE I C V E
Sbjct: 64 NAISEGIMTDELRSFLELNLPKPKEGKKAKYSLGVVEPKVGSHISEVTGIPCQSNEFVQE 123
Query: 459 ILRGIRYHFHSLIKGLTLKACSVAQLGLGHSYSRARVKFNVH 584
+LRG+R HF I L AQLGLGHSYSRA+VKFNV+
Sbjct: 124 LLRGVRLHFDRFISELKKSDLEKAQLGLGHSYSRAKVKFNVN 165
>07_03_1578 +
27872636-27872840,27872928-27873175,27873215-27873295,
27873665-27873822,27874391-27874450,27874655-27874873,
27875100-27875201,27875352-27875500,27875582-27875734,
27875839-27876194
Length = 576
Score = 118 bits (284), Expect(2) = 7e-33
Identities = 63/150 (42%), Positives = 90/150 (60%), Gaps = 2/150 (1%)
Frame = +3
Query: 105 YVLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIVALENI 284
Y+LFE ++G+ALF +E+ + SV +LQRF+ V L F P SA+ AL
Sbjct: 4 YLLFESASGYALFHAHGVDEIGQGVDAARASVLELQRFSKAVKLAGFSPFSSAVDALNQC 63
Query: 285 NAVSEGILPEDLNLFLEGGLPKRK--KRSKCTLGVLDPKLGAAISEALEIQCTHTGAVPE 458
NA+SEGI+ ++L FLE LPK K K++K ++GV++PK+G+ ISEA I C V E
Sbjct: 64 NAISEGIMTDELRSFLELNLPKVKEGKKAKYSVGVMEPKVGSHISEATGIPCQCNEFVQE 123
Query: 459 ILRGIRYHFHSLIKGLTLKACSVAQLGLGH 548
+LRG+R HF I L + + A + GH
Sbjct: 124 LLRGVRLHFDHFIDQLKVVDFTFALVSTGH 153
Score = 39.9 bits (89), Expect(2) = 7e-33
Identities = 17/19 (89%), Positives = 19/19 (100%)
Frame = +3
Query: 528 AQLGLGHSYSRARVKFNVH 584
AQLGLGHSYSRA+VKFNV+
Sbjct: 185 AQLGLGHSYSRAKVKFNVN 203
>03_02_0999 -
13105030-13105434,13105716-13105850,13105933-13106133,
13106374-13106673,13106764-13106964,13107246-13107410,
13107484-13107663,13108171-13108212,13108327-13108404
Length = 568
Score = 80.2 bits (189), Expect = 1e-15
Identities = 57/157 (36%), Positives = 77/157 (49%)
Frame = +3
Query: 108 VLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIVALENIN 287
VLFE AGFALF+V + +L + + + T VV L AF ++ AL
Sbjct: 3 VLFETPAGFALFKVLDEGKLDK-VEDLWKEFTTSDSARKVVELKAFNKFENTSDALSAAT 61
Query: 288 AVSEGILPEDLNLFLEGGLPKRKKRSKCTLGVLDPKLGAAISEALEIQCTHTGAVPEILR 467
+ + + L FL+ K TL V D KLG AI E L+I C H AV E++R
Sbjct: 62 LIIDSKPTKGLRKFLQ------KHCEGETLAVADSKLGNAIKEKLKIDCLHNSAVMELMR 115
Query: 468 GIRYHFHSLIKGLTLKACSVAQLGLGHSYSRARVKFN 578
G+R LI GL + LGL HS SR ++KF+
Sbjct: 116 GLRNQLTELISGLGAQDLGPMSLGLSHSLSRYKLKFS 152
>03_02_0998 -
13097675-13098079,13098307-13098441,13098522-13098722,
13099060-13099359,13099449-13099649,13099932-13100096,
13100170-13100349,13100896-13100937,13101040-13101117
Length = 568
Score = 80.2 bits (189), Expect = 1e-15
Identities = 57/157 (36%), Positives = 77/157 (49%)
Frame = +3
Query: 108 VLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIVALENIN 287
VLFE AGFALF+V + +L + + + T VV L AF ++ AL
Sbjct: 3 VLFETPAGFALFKVLDEGKLDK-VEDLWKEFTTSDSARKVVELKAFNKFENTSDALSAAT 61
Query: 288 AVSEGILPEDLNLFLEGGLPKRKKRSKCTLGVLDPKLGAAISEALEIQCTHTGAVPEILR 467
+ + + L FL+ K TL V D KLG AI E L+I C H AV E++R
Sbjct: 62 LIIDSKPTKGLRKFLQ------KHCEGETLAVADSKLGNAIKEKLKIDCLHNSAVMELMR 115
Query: 468 GIRYHFHSLIKGLTLKACSVAQLGLGHSYSRARVKFN 578
G+R LI GL + LGL HS SR ++KF+
Sbjct: 116 GLRNQLTELISGLGAQDLGPMSLGLSHSLSRYKLKFS 152
>12_02_1165 +
26633371-26633679,26635183-26635276,26635732-26635822,
26636112-26636199,26636300-26636341,26636648-26636809,
26636915-26637094,26637280-26637447,26637977-26638195
Length = 450
Score = 34.3 bits (75), Expect = 0.072
Identities = 38/125 (30%), Positives = 56/125 (44%), Gaps = 1/125 (0%)
Frame = +3
Query: 108 VLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIVALENIN 287
+LFE +GFA+FRV++ L + + S TD + VV I F V + N
Sbjct: 172 MLFETPSGFAMFRVSDV--LFRYPEDIWSSFTDPHTAHQVVRTIGFIEVGDKSVVWD--N 227
Query: 288 AVSEGILPEDLNLFLEGGLPKRKKRSKCTLGVLDPKLGAAISEALEIQCTHTG-AVPEIL 464
+ G ED+ F+ K +L V D +L I + L I C G VPE++
Sbjct: 228 DIGPG---EDIEHFI-------LKFPIKSLVVPDAQLKFIIEKNLNISCWFNGRIVPELI 277
Query: 465 RGIRY 479
G+ Y
Sbjct: 278 WGLNY 282
>09_02_0393 +
8510089-8510274,8510450-8510806,8510889-8511011,
8511209-8511523,8511576-8511682,8512559-8512629,
8512952-8513029,8513390-8513454,8514224-8514274,
8514373-8514414,8514785-8515105,8515154-8517880
Length = 1480
Score = 30.3 bits (65), Expect = 1.2
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Frame = +3
Query: 315 DLNLFLEGGLPKRKKR-SKCTLGVLDP--KLGAAISEALEIQCTHTGAVPEILRGIRYHF 485
DL L + GL +++ R S+CT +LDP G + L I G + R ++ H
Sbjct: 594 DLGLIDQEGLCRKESRISRCTSSLLDPLEVYGREDEKKLIISSLLDGCLTFKKRRLKEHE 653
Query: 486 HSLIKGLTLKACSVAQLGLGHSYSRARVKFN 578
+ K ++ S+ +G + AR+ +N
Sbjct: 654 YETCKAGAVRLISIVAMGGMGKTTLARLVYN 684
>04_03_0055 +
10299539-10299703,10300042-10300746,10301025-10301116,
10302896-10303313
Length = 459
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = -3
Query: 469 PLKISGTAPVCVH*ISRASLMAAPSLGSSTPSVHFDRFFLFGRPPSRNRFKSSGR 305
PL + T+P+ + +++P S PS H R F+F + P+ N + GR
Sbjct: 324 PLVLHATSPLRLLCTLHGPRLSSPK-PSHQPSTHLPRCFIFPQNPTSNELELMGR 377
>04_01_0275 + 3648866-3649951
Length = 361
Score = 29.1 bits (62), Expect = 2.7
Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
Frame = +3
Query: 147 VAEFEELAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSA--IVALENINAVSEGILPEDL 320
V E +E AFLP+ +ESV L V + +P ++A LE I +S+ ++ L
Sbjct: 95 VRELDEALAFLPEFQESVLILHIATNVFYGLCIEPDQNAASFKQLEAIKTLSDYMV--FL 152
Query: 321 NLFLEGGLPKRKKRS--KCTLGVLDPKLGAAISEALEIQCTHTGAVPEILR 467
G LP K RS + T L+ KL + + + T + EILR
Sbjct: 153 VAVRPGMLPGLKLRSLYEATQKALE-KLWSEQRRSCNCKRTKERCLAEILR 202
>07_01_0103 - 779554-780434,780542-780791
Length = 376
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +3
Query: 360 RSKCTLGVLDPKLGAAISEALEIQCTHTGAVPEILRGIRYHFHSLIKGLTL 512
+S GV + AA+ EA + G + I RG+R HFH I + +
Sbjct: 285 KSSTRRGVAARLVQAALGEAARKREVRRGDLRRIERGVRRHFHDDITAVVV 335
>11_06_0190 -
21071831-21071947,21072164-21072259,21072883-21072975,
21073099-21073143,21073241-21073300,21074462-21074506
Length = 151
Score = 27.5 bits (58), Expect = 8.3
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +3
Query: 186 VEESVTDLQRFNAVVTLIAFQPHKSAI--VALENINAVSEGILPEDLNLFLEGGLPKRK 356
+E S++D+ + + L AFQ ++A V +EN+ E + ED+N L GLP RK
Sbjct: 34 LEVSISDMMQ----ILLNAFQIRENACNGVHVENLTDEYESTV-EDVNQILMKGLPNRK 87
>05_06_0075 - 25379820-25380776,25380851-25381179,25381255-25381453
Length = 494
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -3
Query: 364 DRFFLFGRPPSRNRFKSSGRIPSDTALIFSKATIADLCGWKAIKVTT 224
DR + G+ PSR+ +GR + T K I + GW VT+
Sbjct: 88 DRKYRNGKRPSRSTEDKAGRWKASTGKTEGKDPITECYGWVKFCVTS 134
>01_06_0439 + 29398980-29399190,29399910-29400010
Length = 103
Score = 27.5 bits (58), Expect = 8.3
Identities = 19/70 (27%), Positives = 31/70 (44%)
Frame = +2
Query: 332 RRWSSKEEKTIKMHTRCTGSQARSSHQRGPGNSVHAYRSSPGDFERHTLSLPLAHQRPYP 511
++W+S+EE+ ++ G + Q+ P S S D + L+LPL H+R
Sbjct: 6 QKWTSEEEEALRRGVLKHGPGKWRTIQKDPEFSPVLSSRSNIDLKVQPLTLPLRHRRLPC 65
Query: 512 QSMQCGTAWS 541
C A S
Sbjct: 66 AGGSCDAATS 75
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,686,399
Number of Sequences: 37544
Number of extensions: 326324
Number of successful extensions: 901
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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