Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12n09f
         (585 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71181-4|CAA94897.1|  486|Caenorhabditis elegans Hypothetical pr...   143   9e-35
AF043704-1|AAK21475.1|  487|Caenorhabditis elegans Hypothetical ...    78   5e-15
AC006827-4|AAF60881.1|  579|Caenorhabditis elegans Hypothetical ...    30   1.4  
U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AC026301-5|AAK68894.1|  745|Caenorhabditis elegans Hypothetical ...    27   7.4  
Z82085-5|CAB04989.1|  342|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>Z71181-4|CAA94897.1|  486|Caenorhabditis elegans Hypothetical
           protein K07C5.4 protein.
          Length = 486

 Score =  143 bits (346), Expect = 9e-35
 Identities = 71/161 (44%), Positives = 104/161 (64%), Gaps = 1/161 (0%)
 Frame = +3

Query: 105 YVLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIVALENI 284
           +VL+EH+AG+AL ++ EF++    L +V+ +  D  +F+ +V L +F P K+   ALEN 
Sbjct: 7   FVLYEHAAGYALMKIKEFDDAGLILQEVDAAHADGYKFSQIVELASFDPFKNTEAALENC 66

Query: 285 NAVSEGILPEDLNLFLEGGLPKRKKRSKCTLGVLDPKLGAAISEAL-EIQCTHTGAVPEI 461
           N++SEG+   DL  FL+  LPK+KK     LG+ D KL  +++EA  +++    G + EI
Sbjct: 67  NSISEGLAHPDLTNFLQKSLPKKKKH--VVLGINDSKLAGSLTEAFPDLKLVFGGVITEI 124

Query: 462 LRGIRYHFHSLIKGLTLKACSVAQLGLGHSYSRARVKFNVH 584
           LRG R HF  L K L   + S AQL LGHSYSR++VKF+VH
Sbjct: 125 LRGTRVHFERLAKNLPHHSLSKAQLSLGHSYSRSKVKFDVH 165


>AF043704-1|AAK21475.1|  487|Caenorhabditis elegans Hypothetical
           protein W01B11.3 protein.
          Length = 487

 Score = 77.8 bits (183), Expect = 5e-15
 Identities = 46/157 (29%), Positives = 85/157 (54%)
 Frame = +3

Query: 108 VLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIVALENIN 287
           VLFE +AG+A+F+++  ++L   +  + E  +  ++    + L++F+  K+   A+E  +
Sbjct: 3   VLFEVAAGYAVFKLSNEKKLKN-VDNIWEEFSTAEKAQENLQLVSFKKFKTTAGAVEATS 61

Query: 288 AVSEGILPEDLNLFLEGGLPKRKKRSKCTLGVLDPKLGAAISEALEIQCTHTGAVPEILR 467
            ++EG L + L   L+  + + +K     L V D KLG  I E L + C H  ++ E++R
Sbjct: 62  EITEGKLSKTLKKLLKSSVDETEK-----LAVGDAKLGNLIKEKLSLNCVHDSSINELMR 116

Query: 468 GIRYHFHSLIKGLTLKACSVAQLGLGHSYSRARVKFN 578
           G+R H   L+     +  +   L + HS +R +VKFN
Sbjct: 117 GVRAHIEDLL-AEHKEEMNAMNLAVAHSLARYKVKFN 152


>AC006827-4|AAF60881.1|  579|Caenorhabditis elegans Hypothetical
           protein Y81B9A.1 protein.
          Length = 579

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
 Frame = +2

Query: 374 TRCTGSQARSS-HQRGPGNSVHAYR-SSPGDFERHTL-SLPLAHQRPYPQSMQCGTAWSW 544
           T C G   RS  H RG    V  Y+  S G      L  LP+    P  Q+MQ  TAW +
Sbjct: 31  TYCGGCNTRSHMHPRGECQRVGCYQCGSMGHATAQALCDLPIGGVTPEAQTMQQETAWGF 90


>U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical
           protein F32A5.2a protein.
          Length = 1000

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 23/93 (24%), Positives = 36/93 (38%)
 Frame = -3

Query: 463 KISGTAPVCVH*ISRASLMAAPSLGSSTPSVHFDRFFLFGRPPSRNRFKSSGRIPSDTAL 284
           K+S T    VH  +R  +  A S GS    V    FF F    + +   S+  IP+ T +
Sbjct: 136 KLSTTHSPIVHKTARPPIRVASSFGSKGKKVTRKFFFFFNSTRTASTVPSTTVIPTTTRI 195

Query: 283 IFSKATIADLCGWKAIKVTTALKRCKSVTDSST 185
             +  T  +         TT      + T ++T
Sbjct: 196 PTTVTTTTETTTTPQSTTTTTTVPPTTTTSTTT 228


>AC026301-5|AAK68894.1|  745|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.3 protein.
          Length = 745

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = -2

Query: 269 NDRRLVWLESY*SHNSIKTLQICHGLFDLRQESR*LFKFSNAEQRKA 129
           N ++L W+++      IK L++ H  F++ ++   L  +SN E  KA
Sbjct: 631 NGKQLFWVQNMAFELLIKKLKMHHLKFEMEEQWNFLKNYSNKETDKA 677


>Z82085-5|CAB04989.1|  342|Caenorhabditis elegans Hypothetical
           protein ZK218.6 protein.
          Length = 342

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 415 SLMAAP-SLGSSTPSVHFDRFFLFGRPPSRNRF 320
           S+   P S+  S+PSV F+   + G PPS  RF
Sbjct: 3   SIQCQPLSISMSSPSVLFEACAVCGGPPSSRRF 35


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,449,129
Number of Sequences: 27780
Number of extensions: 277413
Number of successful extensions: 665
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)