Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12n08r
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    27   2.1  
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha...    27   3.6  
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   6.3  
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc...    26   6.3  
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar...    26   6.3  

>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1242

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
 Frame = -3

Query: 650  FYLHRIPKFYL*F--FRLHLAVDYLYIDYLEKLLNV--SCVVIKSLVC*FLEKKYFYI*L 483
            FY + I  + + F  + +H +V +L +DYL  L+N     +V++SLV   +  KY  +  
Sbjct: 1003 FYAYAIGFYSISFPMYAIHASVKFLKLDYLRSLMNKLNLKIVMRSLV---MALKYLLLAF 1059

Query: 482  WWSNLLGLFVG--WSL 441
                +L L +G  W L
Sbjct: 1060 LGIFILPLLLGAIWEL 1075


>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 244 NLFNS*QCTCGITKYINAGFTILSADIEYKLKNVNDKQ 357
           +LFN   C C +  +      I  +D+ YK  N  DK+
Sbjct: 468 SLFNICDCPCVVFPFTKVDANIDLSDVSYKPLNEEDKE 505


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -3

Query: 401 IESSALFFFIKTFFVCLSLTFFSLYSISAD-KIVKPALMYFVIPQ 270
           I+++ L  +I T  + + L  FSL + SAD KI  P  +Y ++ +
Sbjct: 185 IKATFLTDYIHTVIILVILIMFSLATYSADKKIGSPGKLYDMLKE 229


>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
           Pms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 794

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +1

Query: 313 SADIEYKLKNVNDKQTKKVLIKKNSAELSIHILEQFEINESFYRDQPTNKPS 468
           S+ +  K+   +++  KK+ +  +S + S+    Q  I+ SF   QP NKPS
Sbjct: 431 SSPLNEKVTASSERMKKKLALFASSTDTSM----QKTIDSSFPLKQPINKPS 478


>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
           Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 508 KKNIFTSSCGGLICWAC 458
           KK+IF + CG L C  C
Sbjct: 159 KKSIFAAKCGHLFCSTC 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,510,928
Number of Sequences: 5004
Number of extensions: 53034
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)