Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12n08f
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    27   2.2  
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual     26   3.8  
SPBC336.10c |tif512||translation initiation factor|Schizosacchar...    26   3.8  
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos...    26   3.8  
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    25   8.7  

>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 467 YW*YW*YQMIPHINSISNIFGYCTLLMRKH 556
           YW Y+ Y  +  +NS   I G+ T ++R H
Sbjct: 573 YWLYYMYANMTSLNSWRKIRGFNTFVLRPH 602


>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 435

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 37  IYLEPVCTRPRLPEKSLLN*IYTTLHFEEHPTHTQYYMV*K 159
           +++   C  P  PE+ L+N IY +L +   P    +Y V K
Sbjct: 385 VHVHCFCRFPD-PEEDLINRIYASLGYRFSPEEVDFYYVRK 424


>SPBC336.10c |tif512||translation initiation
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -3

Query: 557 HVFALKVYNIQKYSKLS*YAESFDITSITSTIWYLIN 447
           H+ AL ++N +KY  +S    + D+  +    + L+N
Sbjct: 59  HIVALDIFNGRKYEDMSPSTHNMDVPVVKRDEYQLVN 95


>SPAC26H5.10c |tif51||translation initiation factor
           eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -3

Query: 557 HVFALKVYNIQKYSKLS*YAESFDITSITSTIWYLIN 447
           H+ AL ++N +KY  +S    + D+  +    + L+N
Sbjct: 59  HIVALDIFNGRKYEDMSPSTHNMDVPVVKRDEYQLVN 95


>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 107 RCILKNILLILSTTWSEN 160
           RC LK ++  LST WS N
Sbjct: 606 RCDLKGLIRRLSTEWSSN 623


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,296,728
Number of Sequences: 5004
Number of extensions: 41883
Number of successful extensions: 84
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)