Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12n08f
         (616 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    25   0.44 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.1  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   5.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   9.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.6  

>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 141 VLHGLKIEYIINHILSSRIK 200
           VLHG ++EY+  H L+  +K
Sbjct: 494 VLHGDEVEYVFGHPLNKSLK 513


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/23 (30%), Positives = 17/23 (73%)
 Frame = +1

Query: 46  EPVCTRPRLPEKSLLN*IYTTLH 114
           +PV +  + PE+++++ ++TT H
Sbjct: 292 QPVHSAYKAPEETIISSVFTTRH 314


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 303 ANMVNIKSHLKPLKHSP-VKLVSFE 232
           +NM+N + H   LKHS  VK++  E
Sbjct: 102 SNMLNSEKHASFLKHSNIVKVLMIE 126


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -3

Query: 515 KLS*YAESFDITSITS 468
           K+S YAESF+ + +T+
Sbjct: 935 KMSRYAESFERSGVTT 950


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -3

Query: 236 LRLYSYAMIIQLLNARRQYVVNYVF 162
           L LY++A ++   N  ++Y+V+ +F
Sbjct: 218 LLLYNHARLMSQDNHSKEYLVSIMF 242


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,452
Number of Sequences: 438
Number of extensions: 2993
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)