Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12n06r
         (705 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0973 - 8193002-8193261,8193388-8193485,8194117-8194401,819...    31   1.2  
01_06_0787 - 31999632-32000045,32000128-32000214,32000295-320005...    29   3.6  
01_03_0071 + 12203227-12203368,12203551-12203703,12204622-122046...    29   3.6  
05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,364...    28   8.3  
01_06_1644 - 38882064-38882504                                         28   8.3  
01_06_1186 + 35223272-35224723,35225536-35225610,35226245-352265...    28   8.3  

>07_01_0973 -
           8193002-8193261,8193388-8193485,8194117-8194401,
           8195559-8195773,8196549-8197058
          Length = 455

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -2

Query: 674 YQPPHVRRRHLIQELAQQFRQDLTEPELLESLFKSP*SHRLDP 546
           Y PPHVRR+ ++    QQ  Q    P L  S   +P + R  P
Sbjct: 41  YSPPHVRRQQMLLLQQQQLLQGQRPPSLSPSPATAPRAARQKP 83


>01_06_0787 -
           31999632-32000045,32000128-32000214,32000295-32000584,
           32000670-32000844,32000930-32001142,32001227-32001328,
           32001418-32001822,32001922-32002134,32002312-32002357,
           32002602-32002867,32003936-32004012,32004095-32004170,
           32004339-32004418,32004945-32005036,32005132-32005171,
           32005301-32005400,32005815-32005962,32006071-32006153,
           32006207-32006383
          Length = 1027

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -1

Query: 645 PHTGAGAAVPPGPHRARAAGVAVQESVVASAGPSCRNN 532
           P    G  V  G    +AAG A  E    +AGP CR +
Sbjct: 301 PAASGGDGVEEGDEEVQAAGEAAVEISSENAGPGCRQS 338


>01_03_0071 +
           12203227-12203368,12203551-12203703,12204622-12204683,
           12204749-12204830,12206029-12206126,12206240-12206657,
           12206793-12206915,12207159-12207178
          Length = 365

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
 Frame = -1

Query: 651 APPHTGAGAAVPPG----PHRARAAG-VAVQESVVASAGPSCR 538
           APPH G+G   PP     PH     G  AVQ +VV   G + R
Sbjct: 5   APPHAGSGGPPPPAVLALPHGMVVVGDEAVQRAVVLRLGVNFR 47


>05_01_0460 -
           3644229-3644420,3644623-3644865,3644959-3645237,
           3645328-3645525,3645614-3646249,3646352-3646606,
           3646718-3646824,3646909-3650705,3650816-3651305,
           3652043-3652433,3652621-3652713,3652818-3652941,
           3653871-3654118
          Length = 2350

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = -1

Query: 651 APPHTGAGAAVPPGPHRARAAG 586
           APP  G GA  PP P  A AAG
Sbjct: 4   APPPPGTGAPPPPLPAAAAAAG 25


>01_06_1644 - 38882064-38882504
          Length = 146

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 277 SNVFRFEGCGSRCNYTETLE 336
           +NV+ F GCGS C  + TLE
Sbjct: 28  NNVYFFRGCGSPCARSPTLE 47


>01_06_1186 +
           35223272-35224723,35225536-35225610,35226245-35226585,
           35226621-35227005,35227131-35227559
          Length = 893

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 668 PPHVRRRHLIQELAQQFRQDLTEPELLESLFKSP*SH 558
           PP + +  L   L QQ +QD+ EP LL  +  S  +H
Sbjct: 456 PPELPQDQLQPSLPQQEKQDMPEPPLLPQVNASTGNH 492


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,824,207
Number of Sequences: 37544
Number of extensions: 362656
Number of successful extensions: 1144
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)