Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12n06r
         (705 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF181639-1|AAD55425.1| 1532|Drosophila melanogaster BcDNA.GH0935...    48   2e-05
AE014298-1422|AAF46565.3| 1532|Drosophila melanogaster CG2967-PA...    48   2e-05
AY069304-1|AAL39449.1|  587|Drosophila melanogaster HL07962p pro...    29   8.1  
AE014298-1675|AAF48083.2|  587|Drosophila melanogaster CG1841-PB...    29   8.1  
AE014298-1674|AAN09296.1|  587|Drosophila melanogaster CG1841-PA...    29   8.1  

>AF181639-1|AAD55425.1| 1532|Drosophila melanogaster BcDNA.GH09358
            protein.
          Length = 1532

 Score = 47.6 bits (108), Expect = 2e-05
 Identities = 19/36 (52%), Positives = 28/36 (77%)
 Frame = -2

Query: 680  DLYQPPHVRRRHLIQELAQQFRQDLTEPELLESLFK 573
            D YQPPHVRRR  +Q++ Q+++ DL+E +LL  LF+
Sbjct: 1494 DNYQPPHVRRRLKVQDIVQKYKMDLSEADLLAHLFQ 1529


>AE014298-1422|AAF46565.3| 1532|Drosophila melanogaster CG2967-PA
            protein.
          Length = 1532

 Score = 47.6 bits (108), Expect = 2e-05
 Identities = 19/36 (52%), Positives = 28/36 (77%)
 Frame = -2

Query: 680  DLYQPPHVRRRHLIQELAQQFRQDLTEPELLESLFK 573
            D YQPPHVRRR  +Q++ Q+++ DL+E +LL  LF+
Sbjct: 1494 DNYQPPHVRRRLKVQDIVQKYKMDLSEADLLAHLFQ 1529


>AY069304-1|AAL39449.1|  587|Drosophila melanogaster HL07962p
           protein.
          Length = 587

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = +1

Query: 418 SSSTHLSNNFFYEEFSETSIYSSGFQAVVSIEVLALVSIVTARGSSRC 561
           S   +L N   YEE   TS+Y S      +   L L  ++T  GS  C
Sbjct: 532 SRVVNLDNLLPYEELEHTSLYLSPHLTGTARNTLTLHVVITPMGSHTC 579


>AE014298-1675|AAF48083.2|  587|Drosophila melanogaster CG1841-PB,
           isoform B protein.
          Length = 587

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = +1

Query: 418 SSSTHLSNNFFYEEFSETSIYSSGFQAVVSIEVLALVSIVTARGSSRC 561
           S   +L N   YEE   TS+Y S      +   L L  ++T  GS  C
Sbjct: 532 SRVVNLDNLLPYEELEHTSLYLSPHLTGTARNTLTLHVVITPMGSHTC 579


>AE014298-1674|AAN09296.1|  587|Drosophila melanogaster CG1841-PA,
           isoform A protein.
          Length = 587

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = +1

Query: 418 SSSTHLSNNFFYEEFSETSIYSSGFQAVVSIEVLALVSIVTARGSSRC 561
           S   +L N   YEE   TS+Y S      +   L L  ++T  GS  C
Sbjct: 532 SRVVNLDNLLPYEELEHTSLYLSPHLTGTARNTLTLHVVITPMGSHTC 579


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,958,541
Number of Sequences: 53049
Number of extensions: 623950
Number of successful extensions: 1633
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1633
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3108380451
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)