Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12n06r
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82280-8|CAB05269.3|  280|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AF098995-14|AAC67475.1|  327|Caenorhabditis elegans F-box b prot...    29   3.2  
Z99942-1|CAB17068.2|  454|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z77131-3|CAB00855.1|  156|Caenorhabditis elegans Hypothetical pr...    27   9.9  
AF000197-4|AAB52899.1|  274|Caenorhabditis elegans Hypothetical ...    27   9.9  

>Z82280-8|CAB05269.3|  280|Caenorhabditis elegans Hypothetical
           protein R05A10.8 protein.
          Length = 280

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = -1

Query: 387 ELIDIYNVNALHTLRYKF 334
           E+ +IYN NA+H LR+K+
Sbjct: 43  EVFNIYNANAIHELRFKY 60


>AF098995-14|AAC67475.1|  327|Caenorhabditis elegans F-box b protein
           protein 47 protein.
          Length = 327

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = -1

Query: 417 HSPPDF---KWLLELIDIYNVNALHTLRYKF 334
           +S P F    WL  LI I+NV  +H+LR +F
Sbjct: 94  YSVPQFDAKSWLKHLIYIFNVTEIHSLRSRF 124


>Z99942-1|CAB17068.2|  454|Caenorhabditis elegans Hypothetical
           protein H13N06.2 protein.
          Length = 454

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -2

Query: 602 EPELLESLFKSP*SHRLDPRAVTILTKAKTSILTTAWKPLE*MLVSENSS 453
           EPEL+ +L  +  S +      T +T   +S+ TT  KP+   + +  SS
Sbjct: 200 EPELMTTLETTTTSSKKSSEFTTTMTPESSSVTTTTAKPVTEPITTSTSS 249


>Z77131-3|CAB00855.1|  156|Caenorhabditis elegans Hypothetical
           protein C54C6.4 protein.
          Length = 156

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = -1

Query: 189 SSKDKCRVPTKRNVA*TEFLSTARYELSLNHYTLVAAFIFIKLFNFKTDRLNIFAIVHKF 10
           SS  KC +  +  +  TE +   R  ++ +H+  ++  I+IK   F+T     +  + K 
Sbjct: 13  SSASKCNLSERYQL--TENIKALRLLIAKDHFGNISKNIYIKFVTFQTIPAVFYGNIRKL 70

Query: 9   Y 7
           Y
Sbjct: 71  Y 71


>AF000197-4|AAB52899.1|  274|Caenorhabditis elegans Hypothetical
           protein T21G5.4 protein.
          Length = 274

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 19/57 (33%), Positives = 31/57 (54%)
 Frame = -2

Query: 683 TDLYQPPHVRRRHLIQELAQQFRQDLTEPELLESLFKSP*SHRLDPRAVTILTKAKT 513
           T+L QPP V+    ++ +A Q+RQ L     L+   KS  S   + R V+I+ + +T
Sbjct: 205 TNLMQPPSVQMNEDVKGIASQYRQALPG---LKPPAKSAMSTGPNARRVSIIEQTQT 258


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,215,497
Number of Sequences: 27780
Number of extensions: 315137
Number of successful extensions: 718
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)