Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12n06r
         (705 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   4.9  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   4.9  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   4.9  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   4.9  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   8.6  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 545 RAVTILTKAKTSILTTAWKPL 483
           +AV +      SI+  AWKPL
Sbjct: 2   KAVIVFCLMALSIVDAAWKPL 22


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 411 PPDFKWLLELIDIYNVNALHTLRYK 337
           PPD  W  +++   N +  + +RYK
Sbjct: 104 PPDKVWKPDIVLFNNADGNYEVRYK 128


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 409 WAVSSSTHLSNNFFY 453
           WA + S  +++NFFY
Sbjct: 204 WAKNDSWRITHNFFY 218


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 545 RAVTILTKAKTSILTTAWKPL 483
           +AV +      SI+  AWKPL
Sbjct: 2   KAVIVFCLMALSIVDAAWKPL 22


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +1

Query: 445 FFYEEFSETSIY--SSGFQAVVSIEVLALVSIV 537
           F+ +E  +  +   + G+Q +  I V+ALVSI+
Sbjct: 382 FYVQEDDDVKLVLLNFGWQMICLIVVIALVSII 414


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,170
Number of Sequences: 438
Number of extensions: 4170
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)