Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12n06f
         (597 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    23   2.6  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          23   2.6  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   7.9  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   7.9  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    21   7.9  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   7.9  

>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 375 QLFHNCQYNISASNCSQYSLSPTLQWY*APFCI 277
           Q   N QYN + SN + Y    + Q+Y    C+
Sbjct: 210 QFNFNYQYNQAYSNYNNYQEGFSCQYYQGKNCV 242


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 375 QLFHNCQYNISASNCSQYSLSPTLQWY*APFCI 277
           Q   N QYN + SN + Y    + Q+Y    C+
Sbjct: 230 QFNFNYQYNQAYSNYNNYQEGFSCQYYQGKNCV 262


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +1

Query: 355 LAVVKQLSSPDPSPLTTDAEVEWVLEVIRYGLSLPLSEHSAVRDC 489
           L V+K+ +SP  SP+T   + +     +R  L   +     + DC
Sbjct: 331 LGVIKREASPYASPMTVGKKKD---GTVRICLDARMINSKMIADC 372


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -3

Query: 565 EELGGWVARREW 530
           + +G W  RREW
Sbjct: 114 DAMGKWCPRREW 125


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = -2

Query: 206 TVPCRRVTARNNNNIIQ-MDSITQLCCSYVLEFNIPNSFLHYKKNHKSRNLDSVLID 39
           T+  R   +  N   ++ + +     C + +  NI  + L+Y    K   L  VLID
Sbjct: 8   TIDTRSTHSMKNFKYLKVLVTFAHFICLFPITINIRKNGLNYNFTKKCYFLRMVLID 64


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -3

Query: 565 EELGGWVARREW 530
           + +G W  RREW
Sbjct: 270 DAMGKWCPRREW 281


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,193
Number of Sequences: 336
Number of extensions: 2580
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)