Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12n06f
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      28   0.90 
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   6.3  
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    25   8.4  

>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = -2

Query: 179 RNNNNIIQMDSITQLCCSYVLEFNIPNSFLHYKKNHKSRNLD 54
           R  N+ I+   IT  C S++LE NI N+FL Y +     N D
Sbjct: 567 REVNSSIEELKITD-CLSFLLEHNIFNTFLVYNEGIVKLNKD 607


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 367 KQLSSPDPSPLTTDAEVEWVLEVIRYGLSLPLSEHSAVRD 486
           + L++P P P+  DA   + + V  YG  + LS    +R+
Sbjct: 860 QSLATPIPEPIPVDAMPTFTVLVPHYGEKILLSLKEIIRE 899


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -3

Query: 535 EWEPVVGSTKHTRHARNPVQHCARSVAVTNHI*SLLEP 422
           +W+P+V   + +     P+   AR V   N + S  EP
Sbjct: 350 KWKPIVADNRKSDQLIFPMNETARPVPSNNGLASSFEP 387


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,232,920
Number of Sequences: 5004
Number of extensions: 41766
Number of successful extensions: 111
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)