Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12n06f
         (597 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0490 + 29456825-29457499,29458771-29459057,29460922-294610...    29   2.8  
07_03_1707 + 28866054-28866065,28866185-28866269,28866398-28867149     28   4.9  
12_01_0874 + 8384332-8384657,8385447-8386044                           28   6.5  

>02_05_0490 +
           29456825-29457499,29458771-29459057,29460922-29461039,
           29461451-29461972,29462058-29462170,29463033-29463053,
           29463726-29463960,29464218-29464381,29464695-29464776,
           29465077-29465166,29465625-29465858,29466347-29466418,
           29466857-29467000,29467573-29467659,29467940-29468098,
           29469216-29469476,29469789-29469836
          Length = 1103

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 122 VLEFNIPNSFLHYKKNHKSRNLDSVLIDQKTCIF 21
           ++EFN+PN F  Y   HK +N D     ++  IF
Sbjct: 729 LVEFNLPNLFDAYMGIHKPKNRDEADFARRRLIF 762


>07_03_1707 + 28866054-28866065,28866185-28866269,28866398-28867149
          Length = 282

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 414 GGVGSRSDQIWFVTATERAQCCTGLRACRVC 506
           GG G+     W   A  +A CC G  +CR C
Sbjct: 227 GGCGTCRGGGWPAAAPMQAMCCPGPSSCRGC 257


>12_01_0874 + 8384332-8384657,8385447-8386044
          Length = 307

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +2

Query: 197 RVPLVFPI*MWESSTELIIKIKIVTGCMQNGAQYHWRVGDKEYWEQLEAEMLYW 358
           R P+ FPI        +++      G  + G    WRVG    W +L+A +L W
Sbjct: 170 RRPIFFPILRRRPQPVVVVSASAAYGGSERGL---WRVGGGRRWRRLQA-VLQW 219


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,090,454
Number of Sequences: 37544
Number of extensions: 254017
Number of successful extensions: 632
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)