Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12n06f
         (597 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF181639-1|AAD55425.1| 1532|Drosophila melanogaster BcDNA.GH0935...    66   3e-11
AE014298-1422|AAF46565.3| 1532|Drosophila melanogaster CG2967-PA...    66   3e-11

>AF181639-1|AAD55425.1| 1532|Drosophila melanogaster BcDNA.GH09358
           protein.
          Length = 1532

 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 7/63 (11%)
 Frame = +1

Query: 343 RDVVLAVVKQLSS-------PDPSPLTTDAEVEWVLEVIRYGLSLPLSEHSAVRDCVRVA 501
           R+VV++VVKQL +        +PS L  D EV+W ++VI +GLSLPL EH  ++DCV V 
Sbjct: 34  REVVVSVVKQLGTNLGITQNAEPSHLVKDEEVKWCMDVICFGLSLPLQEHETIKDCVNVY 93

Query: 502 CAW 510
           C W
Sbjct: 94  CEW 96


>AE014298-1422|AAF46565.3| 1532|Drosophila melanogaster CG2967-PA
           protein.
          Length = 1532

 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 7/63 (11%)
 Frame = +1

Query: 343 RDVVLAVVKQLSS-------PDPSPLTTDAEVEWVLEVIRYGLSLPLSEHSAVRDCVRVA 501
           R+VV++VVKQL +        +PS L  D EV+W ++VI +GLSLPL EH  ++DCV V 
Sbjct: 34  REVVVSVVKQLGTNLGITQNAEPSHLVKDEEVKWCMDVICFGLSLPLQEHETIKDCVNVY 93

Query: 502 CAW 510
           C W
Sbjct: 94  CEW 96


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,804,853
Number of Sequences: 53049
Number of extensions: 439523
Number of successful extensions: 1008
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2420893683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)