Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12n06f
         (597 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13875-14|AAA21155.1|  196|Caenorhabditis elegans Hypothetical p...    29   3.3  
U32275-1|AAA75370.1|  982|Caenorhabditis elegans serine-threonin...    28   4.4  
U11280-5|AAA19437.1|  982|Caenorhabditis elegans Protein kinase ...    28   4.4  
U11280-4|AAM97951.2|  353|Caenorhabditis elegans Protein kinase ...    28   4.4  

>U13875-14|AAA21155.1|  196|Caenorhabditis elegans Hypothetical
           protein C26E6.1 protein.
          Length = 196

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -1

Query: 378 AQLFHNCQY-NISASNCSQYSLSP 310
           A+L H+C +  I  + CSQYSLSP
Sbjct: 41  AKLLHSCIFPKIPTTVCSQYSLSP 64


>U32275-1|AAA75370.1|  982|Caenorhabditis elegans serine-threonine
           kinase protein.
          Length = 982

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
 Frame = +1

Query: 364 VKQLSSPDPSPLTTDAEVEWVLEVIRY---GLSLPLSEHSAVRDCVR 495
           + Q   P  SP+ T  + EW LE +++    L  P  E  +  +C R
Sbjct: 239 IAQNDPPTLSPIDTSEQPEWSLEFVQFIDKCLRKPAEERMSAEECFR 285


>U11280-5|AAA19437.1|  982|Caenorhabditis elegans Protein kinase
           protein 18, isoforma protein.
          Length = 982

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
 Frame = +1

Query: 364 VKQLSSPDPSPLTTDAEVEWVLEVIRY---GLSLPLSEHSAVRDCVR 495
           + Q   P  SP+ T  + EW LE +++    L  P  E  +  +C R
Sbjct: 239 IAQNDPPTLSPIDTSEQPEWSLEFVQFIDKCLRKPAEERMSAEECFR 285


>U11280-4|AAM97951.2|  353|Caenorhabditis elegans Protein kinase
           protein 18, isoformb protein.
          Length = 353

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
 Frame = +1

Query: 364 VKQLSSPDPSPLTTDAEVEWVLEVIRY---GLSLPLSEHSAVRDCVR 495
           + Q   P  SP+ T  + EW LE +++    L  P  E  +  +C R
Sbjct: 239 IAQNDPPTLSPIDTSEQPEWSLEFVQFIDKCLRKPAEERMSAEECFR 285


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,389,123
Number of Sequences: 27780
Number of extensions: 231148
Number of successful extensions: 768
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)