Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12n05r
         (710 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0080 + 644021-645463                                            106   2e-23
11_04_0333 + 16474011-16475478,16475622-16475641                       96   2e-20
03_01_0127 + 988066-988171,988259-988881,988986-989396,989463-99...    30   1.6  
08_02_0535 + 18298244-18298486,18299937-18300353,18300680-183007...    29   3.6  
12_02_0380 - 18356210-18356329,18356415-18356673,18356754-183569...    28   6.4  
10_01_0040 - 467947-468480                                             28   8.4  

>06_01_0080 + 644021-645463
          Length = 480

 Score =  106 bits (254), Expect = 2e-23
 Identities = 51/94 (54%), Positives = 64/94 (68%)
 Frame = -3

Query: 708 IKDAFTKNPQLTNLLLDPFFSERISSAQSSLRTVVAQAALVGVPAPALSAALAFYDGYRS 529
           IK A+ +N  L NLL+DP F++ I   Q++ R VV  A   GV  P +SA+LA++D YR 
Sbjct: 379 IKKAYDRNSDLANLLVDPEFAQEIMDRQAAWRRVVCLAINNGVSTPGMSASLAYFDSYRR 438

Query: 528 GVLPANLLQAQRDYFGAHTYELLHNPGQFIHTNW 427
             LPANL+QAQRDYFGAHTYE +  PG F HT W
Sbjct: 439 DRLPANLVQAQRDYFGAHTYERVDMPGSF-HTEW 471


>11_04_0333 + 16474011-16475478,16475622-16475641
          Length = 495

 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 43/87 (49%), Positives = 61/87 (70%)
 Frame = -3

Query: 708 IKDAFTKNPQLTNLLLDPFFSERISSAQSSLRTVVAQAALVGVPAPALSAALAFYDGYRS 529
           IK A+ +NP+L NL++D  F+  +   Q++ R VVA+A   G+  P +SA+L+++D YR 
Sbjct: 404 IKKAYDRNPELANLIVDREFAREMVQRQNAWRWVVARAVEAGISTPGMSASLSYFDTYRC 463

Query: 528 GVLPANLLQAQRDYFGAHTYELLHNPG 448
             LPANL+QAQRD FGAHTYE +  PG
Sbjct: 464 SRLPANLIQAQRDLFGAHTYERIDRPG 490


>03_01_0127 +
           988066-988171,988259-988881,988986-989396,989463-990037,
           990137-990194
          Length = 590

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 28/93 (30%), Positives = 37/93 (39%), Gaps = 1/93 (1%)
 Frame = -3

Query: 687 NPQLT-NLLLDPFFSERISSAQSSLRTVVAQAALVGVPAPALSAALAFYDGYRSGVLPAN 511
           NP +T N   DP   ER      ++  VV   A        ++A  A   G R+G LP N
Sbjct: 440 NPAVTFNYFRDPRDVERCVRGIETIERVVRSRAFARFTYANVTAMEAAVLGRRAGHLPVN 499

Query: 510 LLQAQRDYFGAHTYELLHNPGQFIHTNWTGHGG 412
           LL  +       T  L     + + T W  HGG
Sbjct: 500 LLPRR----ATDTRPLQQYCRETVMTIWHYHGG 528


>08_02_0535 +
           18298244-18298486,18299937-18300353,18300680-18300757,
           18300893-18301045,18301131-18301239,18301321-18301487,
           18301571-18301954
          Length = 516

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = -3

Query: 570 ALSAALAFYDGYRSGVLPAN 511
           AL+ A+ F++G RSG LPAN
Sbjct: 44  ALAKAILFFEGQRSGRLPAN 63


>12_02_0380 -
           18356210-18356329,18356415-18356673,18356754-18356917,
           18357235-18357397,18357465-18359020
          Length = 753

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = -3

Query: 687 NPQLTNLLLDPFFSERISSAQSSLRTVVAQAALVGVPAPALSA 559
           +P+L ++L+DP+ +  I +A         +A L+G   P ++A
Sbjct: 690 DPKLLHILIDPYGNYVIQTALKECEDAAVRAVLIGAIRPHVAA 732


>10_01_0040 - 467947-468480
          Length = 177

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = -3

Query: 654 FFSERISSAQSSLRTVVAQAALVGVPAPALSAALAFYDGYRSGVLPANLLQAQRDYFGAH 475
           F+ E   SAQ  +R V+  A +     PA    L F+D + +G   A++L  +    G H
Sbjct: 50  FYDETCPSAQDVVRRVIQDARVADPRIPASLIRLHFHDCFVNG-CDASILLDEDLPSGIH 108

Query: 474 T 472
           T
Sbjct: 109 T 109


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,538,145
Number of Sequences: 37544
Number of extensions: 301900
Number of successful extensions: 689
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)