Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12n05r
         (710 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70311-11|CAA94380.1|  484|Caenorhabditis elegans Hypothetical p...   149   2e-36
Z70306-6|CAA94326.1|  484|Caenorhabditis elegans Hypothetical pr...   149   2e-36
U58758-1|AAB93429.2|  819|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>Z70311-11|CAA94380.1|  484|Caenorhabditis elegans Hypothetical
           protein T25B9.9 protein.
          Length = 484

 Score =  149 bits (361), Expect = 2e-36
 Identities = 67/104 (64%), Positives = 83/104 (79%)
 Frame = -3

Query: 708 IKDAFTKNPQLTNLLLDPFFSERISSAQSSLRTVVAQAALVGVPAPALSAALAFYDGYRS 529
           I+ AF KN QL+NLLLD FF++ I+ AQ S R VV  A  +G+P PA S+ALAFYDGY S
Sbjct: 377 IEHAFQKNKQLSNLLLDDFFTKAITEAQDSWRVVVCAAVRLGIPVPAFSSALAFYDGYTS 436

Query: 528 GVLPANLLQAQRDYFGAHTYELLHNPGQFIHTNWTGHGGKISAS 397
            V+PANLLQAQRDYFGAHTYELL  PG ++HTNWTG GG+++++
Sbjct: 437 EVVPANLLQAQRDYFGAHTYELLAKPGTWVHTNWTGTGGRVTSN 480


>Z70306-6|CAA94326.1|  484|Caenorhabditis elegans Hypothetical
           protein T25B9.9 protein.
          Length = 484

 Score =  149 bits (361), Expect = 2e-36
 Identities = 67/104 (64%), Positives = 83/104 (79%)
 Frame = -3

Query: 708 IKDAFTKNPQLTNLLLDPFFSERISSAQSSLRTVVAQAALVGVPAPALSAALAFYDGYRS 529
           I+ AF KN QL+NLLLD FF++ I+ AQ S R VV  A  +G+P PA S+ALAFYDGY S
Sbjct: 377 IEHAFQKNKQLSNLLLDDFFTKAITEAQDSWRVVVCAAVRLGIPVPAFSSALAFYDGYTS 436

Query: 528 GVLPANLLQAQRDYFGAHTYELLHNPGQFIHTNWTGHGGKISAS 397
            V+PANLLQAQRDYFGAHTYELL  PG ++HTNWTG GG+++++
Sbjct: 437 EVVPANLLQAQRDYFGAHTYELLAKPGTWVHTNWTGTGGRVTSN 480


>U58758-1|AAB93429.2|  819|Caenorhabditis elegans Hypothetical
           protein ZK1127.7 protein.
          Length = 819

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 21/60 (35%), Positives = 30/60 (50%)
 Frame = -3

Query: 576 APALSAALAFYDGYRSGVLPANLLQAQRDYFGAHTYELLHNPGQFIHTNWTGHGGKISAS 397
           A A++   A++ G +S  L   ++   +DY G+H   LL   GQF        GGK SAS
Sbjct: 356 AGAVAEISAYHHGEQS--LMGTIVNLAQDYVGSHNINLLLPIGQF---GTRLQGGKDSAS 410


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,609,552
Number of Sequences: 27780
Number of extensions: 280786
Number of successful extensions: 641
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)