Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12n05f
         (583 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S...   223   1e-59
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    30   0.21 
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    30   0.28 
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    30   0.28 
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    28   0.87 
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    27   1.5  
SPCC1840.09 |||NAD dependent epimerase/dehydratase family protei...    27   2.6  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    26   3.5  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     26   3.5  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    26   4.6  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   4.6  
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    25   6.1  
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    25   8.1  

>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score =  223 bits (545), Expect = 1e-59
 Identities = 106/157 (67%), Positives = 125/157 (79%), Gaps = 1/157 (0%)
 Frame = +3

Query: 114 MPQNE-ADIALIGLAVMGQNLILNMNDKGYVVCAFNRTVSKVEEFLKNEAKGTKVIGATS 290
           M Q E AD  LIGLAVMGQNLILN  DKG+ VC +NRT S+V+EFL NEAKG  ++GA S
Sbjct: 1   MSQKEVADFGLIGLAVMGQNLILNGADKGFTVCCYNRTTSRVDEFLANEAKGKSIVGAHS 60

Query: 291 LDDMVSKLKRPRKIVLLVKAGFAVDEFVKKLIPLLSKGDIIIDGGNSQYLDTQKWCKELS 470
           L++ VSKLK+PR  +LLVKAG  VD  ++ L PLL KGDII+DGGNS Y DT + C+EL+
Sbjct: 61  LEEFVSKLKKPRVCILLVKAGKPVDYLIEGLAPLLEKGDIIVDGGNSHYPDTTRRCEELA 120

Query: 471 GTGILYVGMGVSGGEDGARYGPSLMPGGHPAAWPHIK 581
             GIL+VG GVSGGE+GARYGPSLMPGG+PAAWP IK
Sbjct: 121 KKGILFVGSGVSGGEEGARYGPSLMPGGNPAAWPRIK 157


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 30.3 bits (65), Expect = 0.21
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = +3

Query: 177  LNMNDKGYVVCAFNRTVSKVEEFLKNEAKGTKVIGATSLDDMVSKLKRPRKIVLLVKAG 353
            +N N+    +   N  VSKV E ++ E    +++G T+++D + +   P  I LL  AG
Sbjct: 841  VNFNEANSAIHERNEKVSKVSEMIEQE---LELLGGTAIEDKLQE-NVPETIALLAIAG 895


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 29.9 bits (64), Expect = 0.28
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +3

Query: 123  NEADIALIGLAVMGQNLILNMNDKGYVVCAFNRTVSK 233
            N   + L+ +  + Q+++L +N+KG +VC+ N T  K
Sbjct: 1241 NMVTLVLVPMMSLRQDMMLRVNEKGLLVCSGNWTAFK 1277


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 29.9 bits (64), Expect = 0.28
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +3

Query: 123  NEADIALIGLAVMGQNLILNMNDKGYVVCAFNRTVSK 233
            N   + L+ +  + Q+++L +N+KG +VC+ N T  K
Sbjct: 1241 NMVTLVLVPMMSLRQDMMLRVNEKGLLVCSGNWTAFK 1277


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 28.3 bits (60), Expect = 0.87
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
 Frame = -1

Query: 463 SLHHFCVSKYCELPPSIIISPLLKSGISFFTNSSTANPAFTKRTIF-LGLFSLDTMSSKE 287
           SL+      Y    P+  IS  + SG+S++ NSS    A      F L + +L   ++K 
Sbjct: 132 SLYDDYYPAYSSNAPNTAISNYVSSGLSYYGNSSIIMNAVEYNQFFPLTITTLIVKNNKN 191

Query: 286 VAPITFVPL-ASFFRNSSTFDTVLLN 212
           V  ++ +P   SF+ +S   +TVLLN
Sbjct: 192 V--VSNLPKNVSFYFHSD--NTVLLN 213


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 143 ECNISFILRHFFKLDFKSLSNY 78
           +C I FI  H++ +DF +L +Y
Sbjct: 422 DCKIDFIACHWYGIDFSNLQDY 443


>SPCC1840.09 |||NAD dependent epimerase/dehydratase family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 276

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -1

Query: 382 SFFTNSSTANPAFTKRTIFLGLFSLDTMSSKEVA 281
           S FT SS+ N A +    FLG  S + + S+EVA
Sbjct: 210 SLFTVSSSINRATSGALNFLGTASAEPLPSEEVA 243


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 143 ECNISFILRHFFKLDFKSLSNYFKQ 69
           ECN +  ++ F K DF  + ++F+Q
Sbjct: 266 ECNFNHNIKEFSKCDFTQMFHHFEQ 290


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -3

Query: 290  GGSPNHFCTLSFIF*KFLYL*HCSIKRADNITLVIH 183
            G S +HFC  +F+      L H S     NIT  IH
Sbjct: 896  GVSISHFCISNFLILFITALEHASAILCKNITYTIH 931


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -1

Query: 424 PPSIIISPLLKSGISFFTNSSTANPAFTKRT 332
           PPS    PL  S  S  TNSS A+    +RT
Sbjct: 325 PPSSATGPLYHSPQSSLTNSSVASADVQERT 355


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +3

Query: 123 NEADIAL-IGLAVMGQNLILNMNDK 194
           N  D+ L IGL  MG  LILNM D+
Sbjct: 402 NMHDLTLSIGLQTMGARLILNMVDR 426


>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 161 HNSQTYECNISFILRHFFKLDFKSLSNYFKQ 69
           H+S TY   ++ I R F   + KS+S  F Q
Sbjct: 488 HSSGTYRLRVTTISRSFITGNAKSISESFDQ 518


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1112

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 276 IGATSLDDMVSKLKRPRKIVLLVKAGFAVD 365
           +G + L D++  +KRP K+  LV    A+D
Sbjct: 1   MGVSGLWDILEPVKRPVKLETLVNKRLAID 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,378,813
Number of Sequences: 5004
Number of extensions: 46959
Number of successful extensions: 136
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)