Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12m24f
(537 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0529 + 3874865-3876285,3876352-3876367 31 0.77
04_03_0410 - 15569740-15570213 30 1.3
08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,287... 29 2.3
09_04_0436 - 17558603-17559265,17559322-17559384 28 5.4
11_01_0654 + 5290722-5290736,5291176-5291875,5292335-5292450 27 7.2
05_01_0348 + 2726710-2727026,2727289-2727459,2727555-2727628,272... 27 7.2
05_01_0221 - 1646774-1647400,1647525-1647671,1647771-1647813,164... 27 7.2
08_01_0685 + 6025975-6026074,6026168-6026357,6026963-6027034,602... 27 9.5
07_01_1170 - 11065780-11066145,11066297-11066425,11066675-11067673 27 9.5
07_01_0533 + 3942813-3943164,3943244-3943458 27 9.5
05_05_0049 - 21895172-21895181,21895297-21896717 27 9.5
>01_01_0529 + 3874865-3876285,3876352-3876367
Length = 478
Score = 30.7 bits (66), Expect = 0.77
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 289 GMPFISNSTTWLIFLHIVSVDLHGCRSVSGRSSMMHRES 173
G + +TTW+I +H+ L GC S S S+ H+ +
Sbjct: 406 GNYIVPEATTWMIKVHMKKKILLGCTSYSKNGSLSHQNT 444
>04_03_0410 - 15569740-15570213
Length = 157
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = +1
Query: 220 RASPLTQCAGXXXXXXXXXXTACPRITESSEGAGGMKATTRAVATSDQGSAED 378
RA P C G A R++++ EGA G ++ + ++ GS E+
Sbjct: 73 RADPTPPCLGSDAGNRVAVAAAALRVSDAGEGAAGSRSDASSSLSTGGGSKEE 125
>08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,
2875909-2875947,2876309-2876354,2877380-2877922,
2878827-2880847,2880972-2881215,2881642-2881684,
2881923-2881962,2883580-2883675,2883712-2883759,
2883964-2884290
Length = 1498
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/20 (65%), Positives = 13/20 (65%)
Frame = -3
Query: 238 VSVDLHGCRSVSGRSSMMHR 179
V DLHGC S SG SS M R
Sbjct: 1122 VRFDLHGCESSSGASSFMPR 1141
>09_04_0436 - 17558603-17559265,17559322-17559384
Length = 241
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/35 (51%), Positives = 20/35 (57%), Gaps = 7/35 (20%)
Frame = +1
Query: 145 SSAT---NATVTTTPDASWRT----CRTRCGSRAS 228
SSAT NA+ T TP SWRT C+ SRAS
Sbjct: 167 SSATPPPNASATPTPSLSWRTTPPPCQRHPSSRAS 201
>11_01_0654 + 5290722-5290736,5291176-5291875,5292335-5292450
Length = 276
Score = 27.5 bits (58), Expect = 7.2
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -2
Query: 101 EKVRHFIHCRDNTGFPRCEP 42
E+++ ++H D G PRC P
Sbjct: 56 ERIKRYVHRADMLGVPRCSP 75
>05_01_0348 +
2726710-2727026,2727289-2727459,2727555-2727628,
2727872-2727969,2728159-2728227,2728773-2728819,
2728949-2729072,2729148-2729216,2729297-2729400,
2729826-2729901,2730275-2730375,2730648-2730705
Length = 435
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = +3
Query: 126 VEQGQAIVCYQCNSHNDS---RCIMEDLPDTLR 215
++QGQ C+ SHN S C +ED D+ R
Sbjct: 74 IQQGQNFRCHSYGSHNSSETKECSLEDGTDSYR 106
>05_01_0221 -
1646774-1647400,1647525-1647671,1647771-1647813,
1648341-1648675
Length = 383
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3
Query: 475 NFRSASVRSITVVPITGNDAELQPS 401
NFR A ++TV PI G A L PS
Sbjct: 359 NFRQAEPSTVTVAPIVGILARLLPS 383
>08_01_0685 +
6025975-6026074,6026168-6026357,6026963-6027034,
6027187-6027258,6027354-6027425,6027784-6027855,
6027980-6028051,6028134-6028205,6028483-6028554,
6028791-6028865,6028970-6029041,6029134-6029199,
6029267-6029332,6029409-6029453,6029542-6029606,
6029697-6030076,6030455-6030653,6030725-6030883,
6030966-6031084,6031156-6031200,6031226-6031791,
6031871-6032021,6032117-6032454,6033702-6033765,
6034329-6034370,6035572-6035575,6035853-6036039,
6037252-6037323,6037687-6037758,6037867-6037938,
6038019-6038090,6038651-6038725,6038815-6038886,
6038988-6039053,6039163-6039228,6039348-6039392,
6039469-6039533,6039615-6039994,6040070-6040202,
6040354-6040512,6040599-6040717,6040805-6041015,
6041155-6041386,6041469-6041619,6041725-6042084
Length = 1952
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +3
Query: 243 CRKISQVVEFEMNGMPPDNRVIRGCGWDESNYKGR 347
C+ + +++ NGM PD RVI +S+++G+
Sbjct: 683 CKLVGLPSKYKCNGMLPDGRVIAVKQLSQSSHQGK 717
>07_01_1170 - 11065780-11066145,11066297-11066425,11066675-11067673
Length = 497
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +3
Query: 24 VSWLRFRFAAGKTGIISTMNKMAYFFVFAAL 116
+S L FRFA G T N M Y V +AL
Sbjct: 156 LSHLDFRFATGNTTPADQANDMTYSLVISAL 186
>07_01_0533 + 3942813-3943164,3943244-3943458
Length = 188
Score = 27.1 bits (57), Expect = 9.5
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Frame = +1
Query: 112 LCAVLWSKAKQSSATNATVTTTPDASWRTCRTRCGSRASPLTQCA--GXXXXXXXXXXT- 282
LCAVL A S+ T+ T C + P +QC+ G T
Sbjct: 79 LCAVLGGGA---SSLGVTINNTRALELPAA---CNVKTPPASQCSTVGVPMPSPATPATP 132
Query: 283 ACPRI-TESSEGAGGMKAT-TRAVATSDQGSA 372
A P + +E+ G GG KAT T A T+ Q ++
Sbjct: 133 AAPAVPSETPAGTGGSKATPTTATTTTGQSAS 164
>05_05_0049 - 21895172-21895181,21895297-21896717
Length = 476
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = +1
Query: 100 SFSRLCAVLWSKAKQSSATNATVTTTPDASWRTCRTRCGSRASPL 234
SF LCA +W +S A TT CR R SPL
Sbjct: 294 SFQSLCAHIWRAVTRSRRLLAADATTTFRMAVNCRHRLRPAISPL 338
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,583,604
Number of Sequences: 37544
Number of extensions: 284534
Number of successful extensions: 958
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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