Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12m23r
         (382 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    28   0.43 
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    25   4.0  
SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr...    24   7.0  

>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 28.3 bits (60), Expect = 0.43
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -3

Query: 296 FLSWVSVCAIVSASEEGHIYCGRYLAYKMADLCWRAGFEKRSVAH 162
           FLS +S      +  +  I CG  LA+++ D+  +  F KR V +
Sbjct: 272 FLSQISFRGFDVSLNDSQISCGMSLAHELQDVMSKLAFRKRIVGN 316


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +1

Query: 166 ATLRFSKPARQHKSAILYAK*RPQYMCPSSLADTIAHTETHDKKKP-SNFIIAISATQL 339
           +T R  K    H+S ++    RP+ M P S +        H+ + P  N  +A SA  +
Sbjct: 443 STTRRDKGREMHRSQVIQTSGRPKSMAPPSPSPISPSFPLHEIQSPMPNRRMAASADDI 501


>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 747

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 91  ECCLQPCTXRCVTVILLDSILKIDVP 14
           E   +P    CV  + +DS+LK+D P
Sbjct: 385 ETTSKPAEVVCVGSVSIDSVLKLDNP 410


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,515,889
Number of Sequences: 5004
Number of extensions: 28150
Number of successful extensions: 63
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)