Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12m23r
(382 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1312 + 32565447-32565585,32566008-32566060,32566139-325667... 31 0.31
04_04_1311 - 32559549-32559674,32559761-32560078,32560158-325602... 31 0.31
05_04_0283 - 19809137-19809826 29 1.6
03_05_0810 - 27863988-27864281 28 2.9
03_03_0063 - 14176137-14176769,14178220-14178513,14178966-14179058 27 3.8
06_01_0946 + 7289182-7289226,7291366-7291441,7291542-7291655,729... 27 6.6
03_02_0915 + 12360079-12360095,12360225-12361353 27 6.6
03_06_0224 - 32483363-32483671,32483765-32483929,32484957-32485301 26 8.7
01_06_1068 - 34270420-34270581,34272185-34272238,34273741-34274070 26 8.7
>04_04_1312 + 32565447-32565585,32566008-32566060,32566139-32566771,
32566844-32566972,32567052-32567144,32567220-32567336,
32567412-32567512,32567603-32567870,32568236-32568265,
32568361-32568572,32568650-32568731,32568804-32569555,
32569640-32569811,32570412-32570498,32570578-32570895,
32570982-32571107
Length = 1103
Score = 31.1 bits (67), Expect = 0.31
Identities = 12/52 (23%), Positives = 21/52 (40%)
Frame = -3
Query: 287 WVSVCAIVSASEEGHIYCGRYLAYKMADLCWRAGFEKRSVAHYAGYGWPLLP 132
W+ C + S+S + H++C + + C G + S GY P
Sbjct: 967 WIVACCVFSSSNQVHVFCHKDTLASVKPFCIDLGAKANSALKRCGYNQVKFP 1018
>04_04_1311 - 32559549-32559674,32559761-32560078,32560158-32560244,
32560845-32561016,32561101-32561852,32561925-32562006,
32562084-32562295,32562391-32562420,32562786-32563074,
32563143-32563243,32563319-32563435,32563511-32563603,
32563683-32563811,32563884-32564516,32564765-32564844,
32565152-32565164
Length = 1077
Score = 31.1 bits (67), Expect = 0.31
Identities = 12/52 (23%), Positives = 21/52 (40%)
Frame = -3
Query: 287 WVSVCAIVSASEEGHIYCGRYLAYKMADLCWRAGFEKRSVAHYAGYGWPLLP 132
W+ C + S+S + H++C + + C G + S GY P
Sbjct: 941 WIVACCVFSSSNQVHVFCHKDTLASVKPFCIDLGAKANSALKRCGYNQVKFP 992
>05_04_0283 - 19809137-19809826
Length = 229
Score = 28.7 bits (61), Expect = 1.6
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -1
Query: 145 GRCCLLCRKSAAXRGIADECCLQPCTXR 62
G C +CR+ RG C L+PC R
Sbjct: 150 GAPCAICREEMVRRGGGGVCALRPCGHR 177
>03_05_0810 - 27863988-27864281
Length = 97
Score = 27.9 bits (59), Expect = 2.9
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Frame = -1
Query: 205 ICAGVPALRSVVSRTTP-VTAGRCCLLCRKSAAXRGIADECCLQPC 71
ICA + L S V R V +C C++S G C PC
Sbjct: 17 ICAALLLLSSAVERAAAQVPCSQCDQACKESCKGYGRDSSSCSAPC 62
>03_03_0063 - 14176137-14176769,14178220-14178513,14178966-14179058
Length = 339
Score = 27.5 bits (58), Expect = 3.8
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -3
Query: 173 SVAHYAGYGWPLLPSLSEERGKXRHRR*MLSSTM 72
S A YAG G LL +LSE+ + R R +L S +
Sbjct: 213 SPADYAGGGGDLLAALSEDNRQLRRRNSLLLSEL 246
>06_01_0946 +
7289182-7289226,7291366-7291441,7291542-7291655,
7291881-7292447,7293047-7293792
Length = 515
Score = 26.6 bits (56), Expect = 6.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 196 GVPALRSVVSRTTPVTAGRCCLLC 125
GVP+LR +V+ TPV + L C
Sbjct: 402 GVPSLRYIVASATPVPNSQSMLAC 425
>03_02_0915 + 12360079-12360095,12360225-12361353
Length = 381
Score = 26.6 bits (56), Expect = 6.6
Identities = 9/27 (33%), Positives = 13/27 (48%)
Frame = -1
Query: 136 CLLCRKSAAXRGIADECCLQPCTXRCV 56
C +CR A +A +CC RC+
Sbjct: 174 CKICRNVMANAVLASKCCFDSFCDRCI 200
>03_06_0224 - 32483363-32483671,32483765-32483929,32484957-32485301
Length = 272
Score = 26.2 bits (55), Expect = 8.7
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Frame = +3
Query: 204 IGHF--VCQITPAIYVSFFAG*YYCAYRNPRQEKTQQFHYSNKCNTIVSFT--FSLNR 365
IGH+ +CQ T Y+ FAG Y A R+P SN T+ SFT F N+
Sbjct: 126 IGHYFAMCQATSGGYMVAFAGRKYAA-RSP------PVFVSNSSYTVTSFTLVFEFNK 176
>01_06_1068 - 34270420-34270581,34272185-34272238,34273741-34274070
Length = 181
Score = 26.2 bits (55), Expect = 8.7
Identities = 20/57 (35%), Positives = 26/57 (45%)
Frame = -1
Query: 199 AGVPALRSVVSRTTPVTAGRCCLLCRKSAAXRGIADECCLQPCTXRCVTVILLDSIL 29
A VPA + +R+T + GRC CR+ RG A QP VT L +L
Sbjct: 41 ASVPAPPACYTRSTSRSIGRCRGCCRR--RPRGWAAH-AWQPSVMETVTAALARRVL 94
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,769,883
Number of Sequences: 37544
Number of extensions: 189095
Number of successful extensions: 448
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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