Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12m23r
(382 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC015017-1|AAH15017.1| 468|Homo sapiens TAP binding protein-lik... 29 3.8
AK223163-1|BAD96883.1| 468|Homo sapiens TAP binding protein-lik... 29 3.8
AK222956-1|BAD96676.1| 468|Homo sapiens TAP binding protein-lik... 29 3.8
AK002056-1|BAB41077.1| 468|Homo sapiens protein ( Homo sapiens ... 29 3.8
AK001005-1|BAA91465.1| 468|Homo sapiens protein ( Homo sapiens ... 29 3.8
BC098569-1|AAH98569.1| 757|Homo sapiens hypothetical protein FL... 29 5.0
AF538962-1|AAQ10898.1| 623|Homo sapiens unknown protein. 29 5.0
D88308-1|BAA23644.1| 620|Homo sapiens very-long-chain acyl-CoA ... 28 8.7
AK222859-1|BAD96579.1| 620|Homo sapiens solute carrier family 2... 28 8.7
AF096290-1|AAC64973.1| 620|Homo sapiens very long-chain acyl-Co... 28 8.7
>BC015017-1|AAH15017.1| 468|Homo sapiens TAP binding protein-like
protein.
Length = 468
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 144 PAVTGVVRDTTLLKAGTPAQI-GHFVCQITPAIY 242
PA G+ RD +L G Q G ++CQIT ++Y
Sbjct: 257 PAQLGMARDASLTLPGLTIQDEGTYICQITTSLY 290
>AK223163-1|BAD96883.1| 468|Homo sapiens TAP binding protein-like
variant protein.
Length = 468
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 144 PAVTGVVRDTTLLKAGTPAQI-GHFVCQITPAIY 242
PA G+ RD +L G Q G ++CQIT ++Y
Sbjct: 257 PAQLGMARDASLTLPGLTIQDEGTYICQITTSLY 290
>AK222956-1|BAD96676.1| 468|Homo sapiens TAP binding protein-like
variant protein.
Length = 468
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 144 PAVTGVVRDTTLLKAGTPAQI-GHFVCQITPAIY 242
PA G+ RD +L G Q G ++CQIT ++Y
Sbjct: 257 PAQLGMARDASLTLPGLTIQDEGTYICQITTSLY 290
>AK002056-1|BAB41077.1| 468|Homo sapiens protein ( Homo sapiens
cDNA FLJ11194 fis, clone PLACE1007632, weakly similar to
POLIOVIRUS RECEPTOR PRECURSOR. ).
Length = 468
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 144 PAVTGVVRDTTLLKAGTPAQI-GHFVCQITPAIY 242
PA G+ RD +L G Q G ++CQIT ++Y
Sbjct: 257 PAQLGMARDASLTLPGLTIQDEGTYICQITTSLY 290
>AK001005-1|BAA91465.1| 468|Homo sapiens protein ( Homo sapiens
cDNA FLJ10143 fis, clone HEMBA1003281, weakly similar to
POLIOVIRUS RECEPTOR PRECURSOR. ).
Length = 468
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 144 PAVTGVVRDTTLLKAGTPAQI-GHFVCQITPAIY 242
PA G+ RD +L G Q G ++CQIT ++Y
Sbjct: 257 PAQLGMARDASLTLPGLTIQDEGTYICQITTSLY 290
>BC098569-1|AAH98569.1| 757|Homo sapiens hypothetical protein
FLJ22374 protein.
Length = 757
Score = 29.1 bits (62), Expect = 5.0
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = -3
Query: 230 RYLAYKMADLCWRAGFEKRSVAHYAGYGWPLLPSLSEERGKXRHRR*MLSSTMHEXMCY 54
R L +AD+ WRAG +R+V A P+ GK + + + T+H CY
Sbjct: 493 RCLVLALADIVWRAGGRERAVVALASRTQQFSPT-----GKYKADGVLETLTLHSLTCY 546
>AF538962-1|AAQ10898.1| 623|Homo sapiens unknown protein.
Length = 623
Score = 29.1 bits (62), Expect = 5.0
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = -3
Query: 230 RYLAYKMADLCWRAGFEKRSVAHYAGYGWPLLPSLSEERGKXRHRR*MLSSTMHEXMCY 54
R L +AD+ WRAG +R+V A P+ GK + + + T+H CY
Sbjct: 493 RCLVLALADIVWRAGGRERAVVALASRTQQFSPT-----GKYKADGVLETLTLHSLTCY 546
>D88308-1|BAA23644.1| 620|Homo sapiens very-long-chain acyl-CoA
synthetase protein.
Length = 620
Score = 28.3 bits (60), Expect = 8.7
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -2
Query: 336 LCCTYCYNEIAGFFLVVGFGMR-NSISQRRRTH-ILRA 229
LCC Y + +I F V G R S QRR ILRA
Sbjct: 21 LCCPYFFQDIGYFLKVAAVGRRVRSYGQRRPARTILRA 58
>AK222859-1|BAD96579.1| 620|Homo sapiens solute carrier family 27
(fatty acid transporter), member 2 variant protein.
Length = 620
Score = 28.3 bits (60), Expect = 8.7
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -2
Query: 336 LCCTYCYNEIAGFFLVVGFGMR-NSISQRRRTH-ILRA 229
LCC Y + +I F V G R S QRR ILRA
Sbjct: 21 LCCPYFFQDIGYFLKVAAVGRRVRSYGQRRPARTILRA 58
>AF096290-1|AAC64973.1| 620|Homo sapiens very long-chain acyl-CoA
synthetase protein.
Length = 620
Score = 28.3 bits (60), Expect = 8.7
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -2
Query: 336 LCCTYCYNEIAGFFLVVGFGMR-NSISQRRRTH-ILRA 229
LCC Y + +I F V G R S QRR ILRA
Sbjct: 21 LCCPYFFQDIGYFLKVAAVGRRVRSYGQRRPARTILRA 58
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,789,021
Number of Sequences: 237096
Number of extensions: 1064153
Number of successful extensions: 2112
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2112
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2526356360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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