Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12m23f
         (406 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    28   0.48 
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    25   4.5  
SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr...    25   5.9  
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar...    25   5.9  
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    24   7.8  

>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 28.3 bits (60), Expect = 0.48
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 87  FLSWVSVCAIVSASEEGHIYCGRYLAYKMADLCWRAGFEKRSVAH 221
           FLS +S      +  +  I CG  LA+++ D+  +  F KR V +
Sbjct: 272 FLSQISFRGFDVSLNDSQISCGMSLAHELQDVMSKLAFRKRIVGN 316


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = -1

Query: 217 ATLRFSKPARQHKSAILYAK*RPQYMCPSSLADTIAHTETHDKKKP-SNFIIAISATQL 44
           +T R  K    H+S ++    RP+ M P S +        H+ + P  N  +A SA  +
Sbjct: 443 STTRRDKGREMHRSQVIQTSGRPKSMAPPSPSPISPSFPLHEIQSPMPNRRMAASADDI 501


>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 747

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 320 CVTVILLDSILKIDVPI*SSY 382
           CV  + +DS+LK+D P+ S +
Sbjct: 395 CVGSVSIDSVLKLDNPLTSKF 415


>SPAC23H3.03c |||nitrogen permease regulator
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 13/53 (24%), Positives = 23/53 (43%)
 Frame = +1

Query: 175 PICAGVPALRSVVSRTTPVTAGRCCLLCRKSAANEASPMNAVFNHARTMCYCH 333
           P+   + A  +     T V  G+ CLL  ++ ++   P   + N   T+C  H
Sbjct: 29  PLQGPIVACEAPAGSVTNVDGGKNCLLPFETISDYVIPKRELCNKTITVCTNH 81


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 375 DYIGTSILRMLSNSMTVTHRSCMVEDSIHRRCLV 274
           DY+  S+ R+ S S  +T +   VEDS  R  L+
Sbjct: 388 DYVFLSVGRVGSTSENITQKVVHVEDSEKRSYLL 421


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,686,288
Number of Sequences: 5004
Number of extensions: 32942
Number of successful extensions: 74
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)