Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12m23f
(406 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1312 + 32565447-32565585,32566008-32566060,32566139-325667... 31 0.35
04_04_1311 - 32559549-32559674,32559761-32560078,32560158-325602... 31 0.35
01_05_0561 - 23296977-23297174,23297304-23297431,23297990-232983... 28 3.2
12_01_0194 + 1441406-1441726,1442416-1442559,1443172-1443666 27 4.3
04_04_0897 - 29186821-29187459 27 4.3
02_05_0316 - 27825871-27826509 27 4.3
08_01_0190 - 1583044-1583802 27 5.6
07_01_0393 + 2978030-2978189,2978283-2978671 27 5.6
06_01_0946 + 7289182-7289226,7291366-7291441,7291542-7291655,729... 27 7.5
03_06_0224 - 32483363-32483671,32483765-32483929,32484957-32485301 26 9.9
>04_04_1312 + 32565447-32565585,32566008-32566060,32566139-32566771,
32566844-32566972,32567052-32567144,32567220-32567336,
32567412-32567512,32567603-32567870,32568236-32568265,
32568361-32568572,32568650-32568731,32568804-32569555,
32569640-32569811,32570412-32570498,32570578-32570895,
32570982-32571107
Length = 1103
Score = 31.1 bits (67), Expect = 0.35
Identities = 12/52 (23%), Positives = 21/52 (40%)
Frame = +3
Query: 96 WVSVCAIVSASEEGHIYCGRYLAYKMADLCWRAGFEKRSVAHYAGYGWPLLP 251
W+ C + S+S + H++C + + C G + S GY P
Sbjct: 967 WIVACCVFSSSNQVHVFCHKDTLASVKPFCIDLGAKANSALKRCGYNQVKFP 1018
>04_04_1311 - 32559549-32559674,32559761-32560078,32560158-32560244,
32560845-32561016,32561101-32561852,32561925-32562006,
32562084-32562295,32562391-32562420,32562786-32563074,
32563143-32563243,32563319-32563435,32563511-32563603,
32563683-32563811,32563884-32564516,32564765-32564844,
32565152-32565164
Length = 1077
Score = 31.1 bits (67), Expect = 0.35
Identities = 12/52 (23%), Positives = 21/52 (40%)
Frame = +3
Query: 96 WVSVCAIVSASEEGHIYCGRYLAYKMADLCWRAGFEKRSVAHYAGYGWPLLP 251
W+ C + S+S + H++C + + C G + S GY P
Sbjct: 941 WIVACCVFSSSNQVHVFCHKDTLASVKPFCIDLGAKANSALKRCGYNQVKFP 992
>01_05_0561 -
23296977-23297174,23297304-23297431,23297990-23298362,
23298629-23299069
Length = 379
Score = 27.9 bits (59), Expect = 3.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 255 LSEERGKRGIADECCLQPCTNDVL 326
L E G +A++ C PCT+D L
Sbjct: 189 LKREEGAEVVAEQACYMPCTSDGL 212
>12_01_0194 + 1441406-1441726,1442416-1442559,1443172-1443666
Length = 319
Score = 27.5 bits (58), Expect = 4.3
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 199 LRSVVSRTTPVTAGRCCLLCRKSAANEASPMNAVFNH 309
L +S TTP+ A RCC + R A +A+ ++V+ H
Sbjct: 32 LALAISLTTPMDACRCCAVSR--AFQKAANSDSVWRH 66
>04_04_0897 - 29186821-29187459
Length = 212
Score = 27.5 bits (58), Expect = 4.3
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = -2
Query: 366 GTSILRMLSNSMTVTHRSCM---VEDSIHRRCLVCRA 265
G +R LSN V HR C+ +E R C +CRA
Sbjct: 121 GGDEVRRLSNCRHVFHRGCLDRWMEHDDQRTCPLCRA 157
>02_05_0316 - 27825871-27826509
Length = 212
Score = 27.5 bits (58), Expect = 4.3
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -2
Query: 366 GTSILRMLSNSMTVTHRSCMVEDSIH--RRCLVCRA 265
G +R LSN V HR C+ H R C +CRA
Sbjct: 125 GRDEVRRLSNCRHVFHRGCLDRWMAHEQRTCPLCRA 160
>08_01_0190 - 1583044-1583802
Length = 252
Score = 27.1 bits (57), Expect = 5.6
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 234 GWPLLPSLSEERGKRGIA 287
GWPL PS S RG+R ++
Sbjct: 8 GWPLSPSPSSTRGRRRVS 25
>07_01_0393 + 2978030-2978189,2978283-2978671
Length = 182
Score = 27.1 bits (57), Expect = 5.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 255 LSEERGKRGIADECCLQPCTNDVL 326
L E G +A++ C PCT+D L
Sbjct: 95 LKREEGAEVVAEQACYLPCTDDGL 118
>06_01_0946 +
7289182-7289226,7291366-7291441,7291542-7291655,
7291881-7292447,7293047-7293792
Length = 515
Score = 26.6 bits (56), Expect = 7.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 187 GVPALRSVVSRTTPVTAGRCCLLC 258
GVP+LR +V+ TPV + L C
Sbjct: 402 GVPSLRYIVASATPVPNSQSMLAC 425
>03_06_0224 - 32483363-32483671,32483765-32483929,32484957-32485301
Length = 272
Score = 26.2 bits (55), Expect = 9.9
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Frame = -3
Query: 179 IGHF--VCQITPAIYVSFFAG*YYCAYRNPRQEKTQQFHYSNKCNTIVSFT--FSLNR 18
IGH+ +CQ T Y+ FAG Y A R+P SN T+ SFT F N+
Sbjct: 126 IGHYFAMCQATSGGYMVAFAGRKYAA-RSP------PVFVSNSSYTVTSFTLVFEFNK 176
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,737,859
Number of Sequences: 37544
Number of extensions: 216350
Number of successful extensions: 548
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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