Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12m23f
         (406 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81107-11|CAJ90502.1|  476|Caenorhabditis elegans Hypothetical p...    27   5.1  
Z81107-10|CAB03233.1|  646|Caenorhabditis elegans Hypothetical p...    27   5.1  
Z73103-12|CAJ90500.1|  476|Caenorhabditis elegans Hypothetical p...    27   5.1  
Z73103-11|CAA97431.1|  646|Caenorhabditis elegans Hypothetical p...    27   5.1  
Z73098-7|CAA97341.1| 1215|Caenorhabditis elegans Hypothetical pr...    27   5.1  
Z99281-35|CAB16518.2|  524|Caenorhabditis elegans Hypothetical p...    27   6.8  
Z81016-2|CAB02663.1|  246|Caenorhabditis elegans Hypothetical pr...    27   6.8  
AF016448-14|AAB65960.2|  304|Caenorhabditis elegans Hypothetical...    27   6.8  
Z68222-2|CAA92498.1|  105|Caenorhabditis elegans Hypothetical pr...    26   9.0  
AC006714-6|AAN84810.2|  339|Caenorhabditis elegans Hypothetical ...    26   9.0  
AC006714-5|AAN84811.1|  224|Caenorhabditis elegans Hypothetical ...    26   9.0  

>Z81107-11|CAJ90502.1|  476|Caenorhabditis elegans Hypothetical
           protein R07H5.2b protein.
          Length = 476

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
 Frame = +3

Query: 66  IMKLLGFFLSWVSVCAI----VSASEEGHIYCGRYLAYKMADLCWRAGFEKRSVAHYAGY 233
           I K L   LSW    A     +  S+   ++CG  +  K  D+ +    +K  VA Y G+
Sbjct: 14  ICKTLPPSLSWFGAVAFKAFPLDMSQYKSLFCGSRIPKKEKDMLYLDASQKHFVAFYKGH 73

Query: 234 GWPLLPSLSEERGK 275
             P    + ++ GK
Sbjct: 74  --PYAVRIFDDDGK 85


>Z81107-10|CAB03233.1|  646|Caenorhabditis elegans Hypothetical
           protein R07H5.2a protein.
          Length = 646

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
 Frame = +3

Query: 66  IMKLLGFFLSWVSVCAI----VSASEEGHIYCGRYLAYKMADLCWRAGFEKRSVAHYAGY 233
           I K L   LSW    A     +  S+   ++CG  +  K  D+ +    +K  VA Y G+
Sbjct: 184 ICKTLPPSLSWFGAVAFKAFPLDMSQYKSLFCGSRIPKKEKDMLYLDASQKHFVAFYKGH 243

Query: 234 GWPLLPSLSEERGK 275
             P    + ++ GK
Sbjct: 244 --PYAVRIFDDDGK 255


>Z73103-12|CAJ90500.1|  476|Caenorhabditis elegans Hypothetical
           protein R07H5.2b protein.
          Length = 476

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
 Frame = +3

Query: 66  IMKLLGFFLSWVSVCAI----VSASEEGHIYCGRYLAYKMADLCWRAGFEKRSVAHYAGY 233
           I K L   LSW    A     +  S+   ++CG  +  K  D+ +    +K  VA Y G+
Sbjct: 14  ICKTLPPSLSWFGAVAFKAFPLDMSQYKSLFCGSRIPKKEKDMLYLDASQKHFVAFYKGH 73

Query: 234 GWPLLPSLSEERGK 275
             P    + ++ GK
Sbjct: 74  --PYAVRIFDDDGK 85


>Z73103-11|CAA97431.1|  646|Caenorhabditis elegans Hypothetical
           protein R07H5.2a protein.
          Length = 646

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
 Frame = +3

Query: 66  IMKLLGFFLSWVSVCAI----VSASEEGHIYCGRYLAYKMADLCWRAGFEKRSVAHYAGY 233
           I K L   LSW    A     +  S+   ++CG  +  K  D+ +    +K  VA Y G+
Sbjct: 184 ICKTLPPSLSWFGAVAFKAFPLDMSQYKSLFCGSRIPKKEKDMLYLDASQKHFVAFYKGH 243

Query: 234 GWPLLPSLSEERGK 275
             P    + ++ GK
Sbjct: 244 --PYAVRIFDDDGK 255


>Z73098-7|CAA97341.1| 1215|Caenorhabditis elegans Hypothetical
           protein T21C9.6 protein.
          Length = 1215

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = +3

Query: 180 LCWRAGFEKRSVAHYAGYGWPLLPSLS---EERGKRGIA 287
           LCW + F +  + +   YG  L PS++   +E  + G+A
Sbjct: 499 LCWGSNFRREVLNYRKNYGQQLNPSMAVVIQEMDRNGVA 537


>Z99281-35|CAB16518.2|  524|Caenorhabditis elegans Hypothetical
           protein Y57G11C.17 protein.
          Length = 524

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 142 YIAGVIWHTKWPICAGVPALRSVVSRTTP 228
           Y+AG ++H K+ +  GVPA  + +    P
Sbjct: 300 YVAGQLFHVKYVVIFGVPAFFAALDGFRP 328


>Z81016-2|CAB02663.1|  246|Caenorhabditis elegans Hypothetical
           protein F21G4.4 protein.
          Length = 246

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 240 PLLPSLSEERGKRGIADECCLQPCT 314
           P +P  S ERG   I DE C  P T
Sbjct: 3   PNIPGPSNERGYDSIMDELCTGPVT 27


>AF016448-14|AAB65960.2|  304|Caenorhabditis elegans Hypothetical
           protein F41E6.12 protein.
          Length = 304

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = +3

Query: 12  YLSVQREREAHNCVALIAIMKLLGFFLSWVSVCAIVSASEEGHIYCGRYLAY 167
           Y  ++RER    C   I   K   F  ++VS CA  +       YC RY  Y
Sbjct: 169 YCVIERERFVKGCHGDID-KKEETFCKTYVSACASTTGVLPVMTYCARYYTY 219


>Z68222-2|CAA92498.1|  105|Caenorhabditis elegans Hypothetical
           protein ZK1251.2 protein.
          Length = 105

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 261 EERGKRGIADECCLQPCTNDVLLSYC 338
           E   +  IA +CC + CT+D +   C
Sbjct: 78  ESNTEVNIASKCCREECTDDFIRKQC 103


>AC006714-6|AAN84810.2|  339|Caenorhabditis elegans Hypothetical
           protein Y119D3B.12a protein.
          Length = 339

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 162 AYKMADLCWRAGFEKR 209
           +YK +D  WR GFEKR
Sbjct: 70  SYKNSDKKWRMGFEKR 85


>AC006714-5|AAN84811.1|  224|Caenorhabditis elegans Hypothetical
           protein Y119D3B.12b protein.
          Length = 224

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 162 AYKMADLCWRAGFEKR 209
           +YK +D  WR GFEKR
Sbjct: 70  SYKNSDKKWRMGFEKR 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,488,392
Number of Sequences: 27780
Number of extensions: 190183
Number of successful extensions: 459
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)