Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12m23f
         (406 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   1.7  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   5.3  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   7.0  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   7.0  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   7.0  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   7.0  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   7.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   9.3  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    20   9.3  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    20   9.3  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 116 YCAYRNPRQEKTQQFHYSNK 57
           Y  Y NP +EK  Q H + K
Sbjct: 88  YLMYENPDEEKRYQEHPNGK 107


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 66  IMKLLGFFLSWVSVCAIVSASEEGHIY 146
           I+  LGF L W +  ++ + +E G  Y
Sbjct: 5   IITALGFLLFWQNSASLENDNEFGFSY 31


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +1

Query: 79  WVFSCRGFRYAQ*YQPAKKD 138
           W+FSC G+        A KD
Sbjct: 66  WIFSCIGYYKLNKIHDAYKD 85


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -2

Query: 318 RSCMVEDSIHRRCLVCR 268
           +SC+++     RC  CR
Sbjct: 150 KSCIIDKRQRNRCQYCR 166


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 241 RCCLLCRKSAANEAS 285
           R C+ C++S   EAS
Sbjct: 73  RSCMCCQESGEREAS 87



 Score = 20.2 bits (40), Expect = 9.3
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -3

Query: 206 LLKAGTPAQIGHFVCQITPAIYVSFFAG 123
           LL     A IG   CQ TP I+   + G
Sbjct: 15  LLNETAKAIIGVDECQATPVIHFLQYPG 42


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -2

Query: 318 RSCMVEDSIHRRCLVCR 268
           +SC+++     RC  CR
Sbjct: 150 KSCIIDKRQRNRCQYCR 166


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 66  IMKLLGFFLSWVSVCAIV 119
           IMKL+G  + W S   I+
Sbjct: 275 IMKLVGIIIMWYSPFGIM 292


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 1    DSDFTYRFKENVKL 42
            D  FT  +KE+VKL
Sbjct: 1283 DDKFTATYKEDVKL 1296


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 126 WLILLRIPKPTTRKNPAISL 67
           +L+ +R   P T K P ISL
Sbjct: 258 FLMTIRESLPPTEKTPLISL 277


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 212 TTLLKAGTPAQIGHFVC 162
           T ++ A TP+ +G F C
Sbjct: 12  TVIVTALTPSTLGRFPC 28


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,035
Number of Sequences: 438
Number of extensions: 2213
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)