Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12m22r
(751 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0428 + 3055163-3055573 238 3e-63
06_01_0427 - 3054204-3054614 238 3e-63
06_01_0423 - 3039527-3039937 238 3e-63
05_04_0449 - 21355439-21355849 238 3e-63
04_03_0909 + 20748653-20749063 238 3e-63
01_06_1456 + 37507156-37507566 238 3e-63
06_01_0217 - 1644696-1645034,1645143-1645214 237 7e-63
11_01_0348 - 2607315-2607424,2608634-2609030 233 1e-61
06_01_0425 - 3045557-3046004,3046852-3046856 222 2e-58
03_03_0212 + 15479850-15479921,15479965-15480083,15480175-154802... 222 2e-58
02_03_0108 - 15324922-15325092,15325189-15325279,15325511-15325596 199 2e-51
12_02_0048 - 12852335-12852745 194 8e-50
02_03_0107 - 15303890-15304060,15304158-15304248,15304505-153046... 186 2e-47
12_02_0047 - 12836779-12837189 182 3e-46
05_05_0297 - 23921648-23921758,23922011-23922089,23922774-239228... 133 2e-31
04_04_0062 + 22437653-22437724,22437866-22437943,22438222-22438392 115 5e-26
04_04_1162 - 31383886-31384644 30 2.3
09_04_0353 + 16915618-16916934 29 3.0
03_01_0575 + 4247431-4247489,4248475-4248547,4248792-4249229,425... 29 3.9
01_06_0746 - 31636024-31641396 24 7.0
11_01_0128 - 1043053-1043151,1043238-1043570,1043588-1043707,104... 28 9.1
03_06_0244 + 32613914-32614666 28 9.1
>06_01_0428 + 3055163-3055573
Length = 136
Score = 238 bits (583), Expect = 3e-63
Identities = 115/124 (92%), Positives = 121/124 (97%)
Frame = -3
Query: 749 GGKAPRXQPATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLV 570
GGKAPR Q ATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLV
Sbjct: 13 GGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLV 72
Query: 569 REIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 390
REIAQDFKTDLRFQS+A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR
Sbjct: 73 REIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132
Query: 389 GERA 378
GERA
Sbjct: 133 GERA 136
>06_01_0427 - 3054204-3054614
Length = 136
Score = 238 bits (583), Expect = 3e-63
Identities = 115/124 (92%), Positives = 121/124 (97%)
Frame = -3
Query: 749 GGKAPRXQPATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLV 570
GGKAPR Q ATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLV
Sbjct: 13 GGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLV 72
Query: 569 REIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 390
REIAQDFKTDLRFQS+A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR
Sbjct: 73 REIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132
Query: 389 GERA 378
GERA
Sbjct: 133 GERA 136
>06_01_0423 - 3039527-3039937
Length = 136
Score = 238 bits (583), Expect = 3e-63
Identities = 115/124 (92%), Positives = 121/124 (97%)
Frame = -3
Query: 749 GGKAPRXQPATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLV 570
GGKAPR Q ATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLV
Sbjct: 13 GGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLV 72
Query: 569 REIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 390
REIAQDFKTDLRFQS+A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR
Sbjct: 73 REIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132
Query: 389 GERA 378
GERA
Sbjct: 133 GERA 136
>05_04_0449 - 21355439-21355849
Length = 136
Score = 238 bits (583), Expect = 3e-63
Identities = 115/124 (92%), Positives = 121/124 (97%)
Frame = -3
Query: 749 GGKAPRXQPATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLV 570
GGKAPR Q ATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLV
Sbjct: 13 GGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLV 72
Query: 569 REIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 390
REIAQDFKTDLRFQS+A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR
Sbjct: 73 REIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132
Query: 389 GERA 378
GERA
Sbjct: 133 GERA 136
>04_03_0909 + 20748653-20749063
Length = 136
Score = 238 bits (583), Expect = 3e-63
Identities = 115/124 (92%), Positives = 121/124 (97%)
Frame = -3
Query: 749 GGKAPRXQPATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLV 570
GGKAPR Q ATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLV
Sbjct: 13 GGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLV 72
Query: 569 REIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 390
REIAQDFKTDLRFQS+A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR
Sbjct: 73 REIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132
Query: 389 GERA 378
GERA
Sbjct: 133 GERA 136
>01_06_1456 + 37507156-37507566
Length = 136
Score = 238 bits (583), Expect = 3e-63
Identities = 115/124 (92%), Positives = 121/124 (97%)
Frame = -3
Query: 749 GGKAPRXQPATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLV 570
GGKAPR Q ATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLV
Sbjct: 13 GGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLV 72
Query: 569 REIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 390
REIAQDFKTDLRFQS+A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR
Sbjct: 73 REIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132
Query: 389 GERA 378
GERA
Sbjct: 133 GERA 136
>06_01_0217 - 1644696-1645034,1645143-1645214
Length = 136
Score = 237 bits (580), Expect = 7e-63
Identities = 116/124 (93%), Positives = 120/124 (96%)
Frame = -3
Query: 749 GGKAPRXQPATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLV 570
GGKAPR Q ATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLV
Sbjct: 13 GGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLV 72
Query: 569 REIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 390
REIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR
Sbjct: 73 REIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132
Query: 389 GERA 378
GERA
Sbjct: 133 GERA 136
>11_01_0348 - 2607315-2607424,2608634-2609030
Length = 168
Score = 233 bits (569), Expect = 1e-61
Identities = 112/121 (92%), Positives = 118/121 (97%)
Frame = -3
Query: 749 GGKAPRXQPATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLV 570
GGKAPR Q ATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLV
Sbjct: 13 GGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLV 72
Query: 569 REIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 390
REIAQDFKTDLRFQS+A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR
Sbjct: 73 REIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132
Query: 389 G 387
G
Sbjct: 133 G 133
>06_01_0425 - 3045557-3046004,3046852-3046856
Length = 150
Score = 222 bits (543), Expect = 2e-58
Identities = 108/119 (90%), Positives = 114/119 (95%)
Frame = -3
Query: 734 RXQPATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQ 555
R Q ATKA KSAP+TGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQ
Sbjct: 32 RKQLATKATCKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQ 91
Query: 554 DFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 378
DFKTDLRFQS+A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 92 DFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 150
>03_03_0212 +
15479850-15479921,15479965-15480083,15480175-15480265,
15480363-15480533
Length = 150
Score = 222 bits (543), Expect = 2e-58
Identities = 116/138 (84%), Positives = 120/138 (86%), Gaps = 14/138 (10%)
Frame = -3
Query: 749 GGKAPRXQPATK--------------AARKSAPSTGGVKKPHRYRPGTVALREIRRYQKS 612
GGKAPR Q ATK AARKSAP+TGGVKKPHRYRPGTVALREIR+YQKS
Sbjct: 13 GGKAPRKQLATKSDFDRWSYITISVQAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS 72
Query: 611 TELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRV 432
TELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRV
Sbjct: 73 TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV 132
Query: 431 TIMPKDIQLARRIRGERA 378
TIMPKDIQLARRIRGERA
Sbjct: 133 TIMPKDIQLARRIRGERA 150
>02_03_0108 - 15324922-15325092,15325189-15325279,15325511-15325596
Length = 115
Score = 199 bits (486), Expect = 2e-51
Identities = 97/111 (87%), Positives = 104/111 (93%)
Frame = -3
Query: 713 AARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLR 534
AARKSAP GGVKKPHRYRPGTVALREIR+YQK+TELLIRKLPFQRLVREIAQ FK D+R
Sbjct: 4 AARKSAPCIGGVKKPHRYRPGTVALREIRKYQKNTELLIRKLPFQRLVREIAQLFKHDMR 63
Query: 533 FQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 381
FQS A+ ALQEA+EAYLVGLFEDTNLCAIH+KRVTIM KD+QLARRIRGER
Sbjct: 64 FQSHAVLALQEAAEAYLVGLFEDTNLCAIHSKRVTIMSKDVQLARRIRGER 114
>12_02_0048 - 12852335-12852745
Length = 136
Score = 194 bits (472), Expect = 8e-50
Identities = 93/120 (77%), Positives = 106/120 (88%)
Frame = -3
Query: 737 PRXQPATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIA 558
PR K ARKSAP+ G+KKPHR++PGTVALREIR YQKSTELLIRKLPFQRLV+EIA
Sbjct: 17 PRKLLVMKVARKSAPTMAGLKKPHRFKPGTVALREIRTYQKSTELLIRKLPFQRLVQEIA 76
Query: 557 QDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 378
QD ++ +RFQS+A+ ALQEA+E YLVGLF+DTNLC IHAKRVTIMPKDIQLARRIRGE+A
Sbjct: 77 QDVRSYVRFQSSAVVALQEAAETYLVGLFKDTNLCVIHAKRVTIMPKDIQLARRIRGEKA 136
>02_03_0107 -
15303890-15304060,15304158-15304248,15304505-15304614,
15304715-15304784,15306365-15306558
Length = 211
Score = 186 bits (453), Expect = 2e-47
Identities = 100/134 (74%), Positives = 109/134 (81%), Gaps = 11/134 (8%)
Frame = -3
Query: 749 GGKAPRX--------QPATKA---ARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTEL 603
GGKAPR PA + ARKS P G VKKP R+RPGTVALREIR+YQK+TEL
Sbjct: 78 GGKAPRKPLRAIAAVMPAPSSRGVARKSVPFIG-VKKPRRHRPGTVALREIRKYQKNTEL 136
Query: 602 LIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIM 423
LIRKLPFQRLVREIAQ FK D+RFQS A+ ALQEA+EAYLVGLFEDTNLCAIH+KRVTIM
Sbjct: 137 LIRKLPFQRLVREIAQHFKHDMRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHSKRVTIM 196
Query: 422 PKDIQLARRIRGER 381
KD+QLARRIRGER
Sbjct: 197 SKDVQLARRIRGER 210
>12_02_0047 - 12836779-12837189
Length = 136
Score = 182 bits (443), Expect = 3e-46
Identities = 89/123 (72%), Positives = 99/123 (80%)
Frame = -3
Query: 746 GKAPRXQPATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVR 567
G PR K ARKSAP G+KKPHR+ P VALREIR YQKSTELLIRKLPFQRLV+
Sbjct: 14 GNVPRKLLVMKVARKSAPMMAGLKKPHRFNPWIVALREIRTYQKSTELLIRKLPFQRLVQ 73
Query: 566 EIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 387
EI QD ++ +RFQS+A+ LQEA+E YLVGLFEDTNLC IHAKRVTIMPKDIQLAR I G
Sbjct: 74 EITQDIRSYVRFQSSAMAVLQEAAETYLVGLFEDTNLCVIHAKRVTIMPKDIQLARCIGG 133
Query: 386 ERA 378
E+A
Sbjct: 134 EKA 136
>05_05_0297 -
23921648-23921758,23922011-23922089,23922774-23922822,
23923180-23923255,23923693-23923767,23923862-23923992,
23924830-23924935
Length = 208
Score = 133 bits (321), Expect = 2e-31
Identities = 71/122 (58%), Positives = 88/122 (72%), Gaps = 1/122 (0%)
Frame = -3
Query: 743 KAPRXQPATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVRE 564
++PR A +A T +KPHR+RPGTVALREIR++QK+TELLI PF RLVRE
Sbjct: 24 RSPRPSKAQRAGGTPRQQTKQ-RKPHRFRPGTVALREIRKFQKTTELLIPFAPFSRLVRE 82
Query: 563 IAQDFKTDL-RFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 387
I + D+ R+ A+ ALQEA+E +LV +FE +NLCAIHAKRVTIM KD+QLARRI G
Sbjct: 83 ITDFYSKDVSRWTLEALLALQEAAEYHLVDIFEVSNLCAIHAKRVTIMQKDMQLARRIGG 142
Query: 386 ER 381
R
Sbjct: 143 RR 144
>04_04_0062 + 22437653-22437724,22437866-22437943,22438222-22438392
Length = 106
Score = 115 bits (276), Expect = 5e-26
Identities = 74/124 (59%), Positives = 82/124 (66%)
Frame = -3
Query: 749 GGKAPRXQPATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLV 570
GGKAPR Q ATKAARKSAP+ T +++ RY P++R
Sbjct: 13 GGKAPRKQLATKAARKSAPT-------------TGGVKKPHRYP----------PWKRCS 49
Query: 569 REIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 390
TDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR
Sbjct: 50 -------STDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 102
Query: 389 GERA 378
GERA
Sbjct: 103 GERA 106
>04_04_1162 - 31383886-31384644
Length = 252
Score = 29.9 bits (64), Expect = 2.3
Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Frame = -3
Query: 740 APRXQPATKAARKSAPSTGG--VKKPHRYRPGTVAL--REIRRYQKSTELLIRKLPFQRL 573
A R P AAR SA + GG K P + P V E R+ ELL R P L
Sbjct: 144 ACRVAPGAVAARASAAAVGGGTTKVPAGHVPVEVGAEGEETERFVVPAELLGRP-PIAEL 202
Query: 572 VREIAQDF 549
+R AQ++
Sbjct: 203 LRRAAQEY 210
>09_04_0353 + 16915618-16916934
Length = 438
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 384 FTTDSSSKLNILRHDGHTFGVNSTQVGV 467
F DS+S +L ++ TFG NST+V V
Sbjct: 163 FYGDSASSAGVLANETFTFGTNSTRVAV 190
>03_01_0575 +
4247431-4247489,4248475-4248547,4248792-4249229,
4252122-4253339
Length = 595
Score = 29.1 bits (62), Expect = 3.9
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = -3
Query: 659 RPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLV 480
RP V L + Y+ + EL + K F L R+ + + L FQS + E+Y+
Sbjct: 171 RPRPVYLIDFACYKPADELKVSKAEFIDLARKSGKFDEDSLAFQSRLLAKSGIGDESYMP 230
Query: 479 G-LFEDTNLCA 450
+FE CA
Sbjct: 231 RCVFEPGTNCA 241
>01_06_0746 - 31636024-31641396
Length = 1790
Score = 23.8 bits (49), Expect(2) = 7.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 236 YATMKYENDVFHQNSVIGLLAKPR 165
+ +++YENDV+ N GL +PR
Sbjct: 1035 FGSVQYENDVYPMNG--GLSQRPR 1056
Score = 22.6 bits (46), Expect(2) = 7.0
Identities = 7/19 (36%), Positives = 14/19 (73%)
Frame = -3
Query: 167 RYGHVILCKVH*SQKKPMD 111
+Y +V+ C+++ +QKK D
Sbjct: 1081 KYTYVVACQIYGNQKKAKD 1099
>11_01_0128 -
1043053-1043151,1043238-1043570,1043588-1043707,
1043810-1043993,1044088-1044275,1044714-1044808,
1044884-1045003,1045232-1045350,1052717-1052799,
1052892-1053071
Length = 506
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/41 (41%), Positives = 20/41 (48%)
Frame = +1
Query: 628 RISRRATVPGR*RCGFLTPPVLGADFRAAFVAGXLRGALPP 750
RI +V C +L PP L ADF +A LR LPP
Sbjct: 315 RIFLPTSVSNLLNCDYLDPP-LKADFNEQCLAEHLREVLPP 354
>03_06_0244 + 32613914-32614666
Length = 250
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 502 SWRAPMAADWKRKSVLKS*AISLTRRWKGSLRISNSVD 615
SW A WK +V + + RRWK S+ S+D
Sbjct: 207 SWARHQAMQWKASAVSRLVPAAHRRRWKASVVSRRSLD 244
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,077,093
Number of Sequences: 37544
Number of extensions: 334857
Number of successful extensions: 928
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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