Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12m21r
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase Ade2|Sc...    27   2.2  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    27   3.8  
SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   6.6  
SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator comp...    25   8.8  

>SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase
           Ade2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +3

Query: 612 FETL-GWQQPAVGLDSWDGLPARWEKRV 692
           +ET  GW+ P  G+  WD +P   +K +
Sbjct: 380 YETFPGWKVPTTGITHWDQMPENAKKYI 407


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1323

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 645  PQLAVATLGSQMNYPKHIFLCSMSSHSL 562
            P+     LG Q+N PK   L  +SSHSL
Sbjct: 1110 PKQVTEKLGVQLNLPKTKILEKVSSHSL 1137


>SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +1

Query: 283 MFTFYNLNSIFSKY*TFLILMLNSEYIKYQEKQ 381
           +FT +NL +  ++  T    +LNS YIKYQ ++
Sbjct: 125 IFTEHNLFTKDARPLTLHCTLLNSRYIKYQGRR 157


>SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator complex
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 149 SSRLHFGVYFKNHSIV 102
           SS LH  +YFK H IV
Sbjct: 368 SSSLHLSLYFKEHPIV 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,001,433
Number of Sequences: 5004
Number of extensions: 62380
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)