Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12m19r
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    27   3.9  
SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyce...    27   3.9  
SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase Cka1|Sch...    26   5.1  
SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|c...    26   5.1  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    26   5.1  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    25   8.9  
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   8.9  

>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 134 ICNLLILSNAKFAVKFAMDKSYEKLKLELNIIRKV 30
           +C+   +++ KF V F+    Y  LKL   +IRK+
Sbjct: 44  MCSKFSMNSLKFCVLFSFKTVYSLLKLIKTLIRKL 78


>SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = +2

Query: 197 LQVLNTKKGNLSISNRKYDHGKTTIKGGNYKSVSLQERIFQIGEFLEFNL 346
           ++V+   KGN +I+N  YD           + +   +R+ +IGE ++F++
Sbjct: 105 MEVVEATKGNPNIANVVYDEHYVYALTPGREDMKNVKRLAEIGEKVDFSM 154


>SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase
           Cka1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/38 (26%), Positives = 23/38 (60%)
 Frame = -3

Query: 143 NQIICNLLILSNAKFAVKFAMDKSYEKLKLELNIIRKV 30
           +++   L +L+N+K  +K      Y+K+K E+ I++ +
Sbjct: 55  SEVFEGLNVLNNSKCIIKVLKPVKYKKIKREIKILQNL 92


>SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 154

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +2

Query: 350 TCTRNISTNVKVKTTKCSLPFCYIKAFSFN 439
           TC+    + +K K  KCS P+C +  +  +
Sbjct: 3   TCSICNESEIKYKCPKCSFPYCSLPCWKIH 32


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = -1

Query: 427 CLYVAKRQATFC--CFNFNICRD 365
           CL + +  +  C  CF+F++CRD
Sbjct: 65  CLKIIRNDSFHCTKCFDFDVCRD 87


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -2

Query: 480 HPLTSQSHHPPFPVLKENAF 421
           HP T   HHPP P    N +
Sbjct: 170 HPHTRPPHHPPHPHFHNNNY 189


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 204 TCSLCFRKGVVSYSTPNT 151
           +C LC  KGV S STP++
Sbjct: 563 SCPLCRTKGVASASTPSS 580


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,138,358
Number of Sequences: 5004
Number of extensions: 66594
Number of successful extensions: 154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)