Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12m19r
         (763 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-3|CAB16508.1|  482|Caenorhabditis elegans Hypothetical pr...    28   8.3  
Z83744-4|CAB06040.4|  735|Caenorhabditis elegans Hypothetical pr...    28   8.3  
Z68318-5|CAA92694.1|  418|Caenorhabditis elegans Hypothetical pr...    28   8.3  
AF040653-10|AAB95029.1|  580|Caenorhabditis elegans F-box b prot...    28   8.3  

>Z99281-3|CAB16508.1|  482|Caenorhabditis elegans Hypothetical
           protein Y57G11C.6 protein.
          Length = 482

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -3

Query: 206 RLAAYVSGRVL-LVILPLTHSC-NQIICNLLILSNAK 102
           R   YVS  V    I  L H C N IICN+ ++SN K
Sbjct: 302 RKVEYVSDDVFRFSIEVLPHGCSNSIICNVTVISNWK 338


>Z83744-4|CAB06040.4|  735|Caenorhabditis elegans Hypothetical
           protein C06A12.4 protein.
          Length = 735

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 257 HGHIFGLICLNCLSWYLRLAAY 192
           HGH+    CL  ++W L++A Y
Sbjct: 304 HGHLHAATCLIDINWVLKIALY 325


>Z68318-5|CAA92694.1|  418|Caenorhabditis elegans Hypothetical
           protein T21B10.4 protein.
          Length = 418

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 18/42 (42%), Positives = 26/42 (61%)
 Frame = +3

Query: 315 SK*VNFWNLTYSLVPETSLQMLKLKQQNVACLFAT*RHFLLI 440
           SK V+F +   SLVPETS   LKL ++ ++ LF +  H L +
Sbjct: 118 SKTVSFVDKKKSLVPETS--ALKLNKKILSTLFDSTSHMLYV 157


>AF040653-10|AAB95029.1|  580|Caenorhabditis elegans F-box b protein
           protein 49 protein.
          Length = 580

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +2

Query: 182 FLKHRLQVLNTKKGNLSISNRKYDHGKTTI-KGGNYKSVSLQERIFQI 322
           FLKH +  L  +   LSI N + D  ++TI KG +Y+   +  +   I
Sbjct: 490 FLKHWMAGLKPELKYLSIENEEQDFDQSTILKGIHYEFAPIDRKFLMI 537


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,998,982
Number of Sequences: 27780
Number of extensions: 358521
Number of successful extensions: 814
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)