Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12m19r
         (763 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    27   0.25 
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    23   3.1  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    23   3.1  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 26.6 bits (56), Expect = 0.25
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 530 ITIQNIITIMLCLQVIKIFHGSHFKFSFNNQTI 628
           + + NI+    C   + IFH +H +  FN+ T+
Sbjct: 277 VFVNNILAASACSLFVVIFHFAHPREEFNHWTV 309


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -2

Query: 699 CYPCRFAS*KLSHSTLQWDNSNRVMVWLLKE 607
           C PC     K++   +Q+   N+  +W+L E
Sbjct: 75  CSPCSEKQKKIADKVVQFLIDNKPEIWVLLE 105


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -2

Query: 699 CYPCRFAS*KLSHSTLQWDNSNRVMVWLLKE 607
           C PC     K++   +Q+   N+  +W+L E
Sbjct: 75  CSPCSEKQKKIADKVVQFLIDNKPEIWVLLE 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,190
Number of Sequences: 438
Number of extensions: 4988
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)