Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12m18r
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    29   0.67 
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    26   4.7  
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    26   6.2  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    25   8.2  
SPAC1805.02c |||electron transfer flavoprotein beta subunit |Sch...    25   8.2  

>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 9/112 (8%)
 Frame = +2

Query: 200 NGAIQREAKRLIVKNKR-------FERSQVLAFVVEWIDENKELEWESTFSTSRQHESFR 358
           + ++ +   + +V NKR       F + + ++  V+++DE+  L      +   Q    R
Sbjct: 218 SASVSKSENKALVNNKRYSDSYFYFSKMRRISIDVDYVDEDLNL----INAYLSQFGKKR 273

Query: 359 HVTELFRHIKRYFSFVEHLHNFSHWHGVFFKYDKFIRI--ADNLVLTSGEFS 508
            + EL   + R FS   + H FS W  +F  +  FI     D  +L+  E S
Sbjct: 274 SLNELCALLSRRFS---NRHTFSEWRALFMHFFPFINSEGVDPAILSDRETS 322


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 20/70 (28%), Positives = 27/70 (38%)
 Frame = +3

Query: 189 NASTTGRSRGKPRGLLSRTKDSKGAKSLPLLSNG*TKTKSWNGNPPSVPLGSMSLLGM*Q 368
           +A TTG S GKP G  + T   KG  +      G +  K       + P    S      
Sbjct: 264 SAPTTGFSFGKPAGQAASTATDKGTTTTSSAGTGFSFGKPATTEDTNKPTAPNSAFTKPA 323

Query: 369 NSSDISKGTF 398
            S+  +K TF
Sbjct: 324 TSTGDNKPTF 333


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +2

Query: 560 RXSVVIVFGSQEDFDNSVTGDIRINLNVNVE 652
           R ++V+V G  + FD  +T  +  ++N N++
Sbjct: 375 RSAIVLVRGLLDHFDQKITSVVSTHINANLQ 405


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 20/73 (27%), Positives = 29/73 (39%)
 Frame = +3

Query: 126 GNRSPSW*MXISLKYMLGTLNNASTTGRSRGKPRGLLSRTKDSKGAKSLPLLSNG*TKTK 305
           GN  PS+      ++     NN+       G PR   SR   +        +SNG +  +
Sbjct: 308 GNSHPSYNKYSHYQHGFN-YNNSGNNRNESGHPRFRNSRRNYNNQGAYPTYMSNGRSANQ 366

Query: 306 SWNGNPPSVPLGS 344
           S   NP +V  GS
Sbjct: 367 SPRNNPQNVNNGS 379


>SPAC1805.02c |||electron transfer flavoprotein beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 467 RIADNLVLTSGEFSCEPV 520
           RI D LV+T+G+ S EP+
Sbjct: 59  RIEDTLVVTAGQTSSEPI 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,886,127
Number of Sequences: 5004
Number of extensions: 61954
Number of successful extensions: 150
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)