Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12m15f
(591 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1D7.01 |||prefoldin subunit 1 |Schizosaccharomyces pombe|chr... 39 6e-04
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 30 0.29
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch... 29 0.38
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 29 0.38
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom... 28 0.89
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 28 0.89
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 27 2.0
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 27 2.0
SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|... 26 3.6
SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch... 25 6.2
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 25 8.3
>SPBC1D7.01 |||prefoldin subunit 1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 112
Score = 38.7 bits (86), Expect = 6e-04
Identities = 20/100 (20%), Positives = 52/100 (52%)
Frame = +1
Query: 148 LQVLMIETKKTIENIDHQLAVLGRMQMHTNLTQREIDVLPPGTKTYESMARMFVQSDLEH 327
+Q +++++ + I Q+A R + L ++E++ + Y S+ +MF++SDL
Sbjct: 8 IQEKAVDSQQQLRTIMVQIAAKERALKISELAKKELEDVGEDKAVYTSLGKMFMKSDLAS 67
Query: 328 IKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDL 447
++ +L + +L I+ L ++ T + +E +++ +
Sbjct: 68 VRTHLDAEMASLREDIEALQKKQTYHETTASNAEQHLQKI 107
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 29.9 bits (64), Expect = 0.29
Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 7/112 (6%)
Frame = +1
Query: 166 ETKKTIENIDHQLAVLGRMQMHTNLTQREIDVLPPGTKTYESMARMFVQSDLEHIKQNLR 345
+ ++ +N+D + L +Q + Q+ + P + + +LEH +
Sbjct: 45 QNEEDAKNMDSVVQKLNELQNNVVAFQKLLQEKTPLSSIQDLEGFREFMENLEHRYEMTV 104
Query: 346 QKTNTLISRIDDLNNRKVCLNH-------TLNESESNIRDLIQQKKDEK*KS 480
+ L ++DL + L H LN SN LI QKKDE KS
Sbjct: 105 SEVRRLSHEVNDLQTDRENLKHQFEDQIEKLNSEISNQNSLILQKKDELEKS 156
>SPBC25H2.15 |||programmed cell death protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 29.5 bits (63), Expect = 0.38
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Frame = +1
Query: 229 HTNLTQREIDVLPPGTKTY-----ESMARMFVQSDLEHIKQN 339
H LT + V PP T+TY E+ MF+ DLE++ QN
Sbjct: 202 HIALTTSGMSVHPPVTETYTYPVTEAFQGMFLGLDLEYVPQN 243
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 29.5 bits (63), Expect = 0.38
Identities = 20/87 (22%), Positives = 40/87 (45%)
Frame = +1
Query: 295 ARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLIQQKKDEK* 474
AR + ++ E K+ L + N RI +L + ++ + NI D+I+Q+ +EK
Sbjct: 1595 ARSELVAEKEKTKEELENQLNEKSQRIKELEEQ--AQKNSSENTHDNIDDMIKQQVEEKL 1652
Query: 475 KSASSRIKPNTFKKIDDWNYNYPHEIN 555
K S+ K + + + +I+
Sbjct: 1653 KENSANFDVKLKKVVAETEFRSKAKIS 1679
Score = 27.1 bits (57), Expect = 2.0
Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 11/118 (9%)
Frame = +1
Query: 124 ELKQAFVDLQVLMIETKKTIENIDHQLAVLGRMQMHTN-----------LTQREIDVLPP 270
EL +++ LQ + K ++N+ QL++ +N L D L
Sbjct: 741 ELDESYKSLQEQLASKKIEVQNVSSQLSICNSQLEQSNHIVDNLKSENLLLTSVKDKLKA 800
Query: 271 GTKTYESMARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRD 444
ES +Q D H+K + + +D +N+R + L++ L + S + +
Sbjct: 801 DLSNLESKLSS-LQQDNFHMKAQIESSNQEYTATVDSMNSRILELSNDLRVANSKLSE 857
>SPBC1778.02 |rap1||telomere binding protein
Rap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 693
Score = 28.3 bits (60), Expect = 0.89
Identities = 19/74 (25%), Positives = 33/74 (44%)
Frame = +1
Query: 271 GTKTYESMARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLI 450
GTK YE +AR + Q LE +Q+ + L + D + C + + S+ +D
Sbjct: 146 GTKVYEELARKYPQHSLESWRQHYKYMKKRL-PPVSDSDESNYC-QRIIVKPYSSQKDYT 203
Query: 451 QQKKDEK*KSASSR 492
Q ++ S S+
Sbjct: 204 QSTHEQTLSSPISK 217
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 28.3 bits (60), Expect = 0.89
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Frame = +1
Query: 160 MIETKKTIENIDHQLAVLGR-MQMHTNLTQREIDVLPPGTKTYESMARMFVQ--SDLEHI 330
+++ KTIEN+ + R + + +LT+ +VL P K YE ++++ + SDL +
Sbjct: 686 LLKHSKTIENVSSNFSKKNRNVVVSESLTKSMEEVLTP-EKFYERLSKLLEEENSDLGEL 744
Query: 331 KQNL 342
K +L
Sbjct: 745 KNHL 748
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 27.1 bits (57), Expect = 2.0
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -2
Query: 440 LMLDSLSFKVWFKHTFRLFKSSMRLINVLVFC 345
+ L++ S++ W KH F+L S +N L C
Sbjct: 329 IRLENASWRTWMKHKFKLKTISPETLNWLKEC 360
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 27.1 bits (57), Expect = 2.0
Identities = 15/62 (24%), Positives = 30/62 (48%)
Frame = +1
Query: 250 EIDVLPPGTKTYESMARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESE 429
E +LP +YE++ +F + D +H+ ++ LI + D + L H +N+
Sbjct: 364 ESQILPCVLHSYETLTNVFHRDDSKHLYESAVDHGRRLIMKFSD-SELHTFLFHCVNKIV 422
Query: 430 SN 435
+N
Sbjct: 423 AN 424
>SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 401
Score = 26.2 bits (55), Expect = 3.6
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Frame = +1
Query: 277 KTYESMARMFVQSDL--EHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDL- 447
KTYE + + + L + +K L NTL++ + + + L+ L + + +DL
Sbjct: 294 KTYEEVEKAYKDLTLSPQDLKLGLESSVNTLLAGVQEQLKQYPDLDSILKAAYPDPKDLK 353
Query: 448 --IQQKKDEK 471
++QKK +K
Sbjct: 354 KAMKQKKQDK 363
>SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 425
Score = 25.4 bits (53), Expect = 6.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 346 QKTNTLISRIDDLNNRKVCLNHTLNE 423
QKT + + R+ D N+R++CL T E
Sbjct: 92 QKTGSELFRLHDRNDREMCLAPTHEE 117
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1052
Score = 25.0 bits (52), Expect = 8.3
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 343 RQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLIQQKKDEK 471
+ K NTL ++ + K +L + ESNI+ L +KK K
Sbjct: 422 KDKANTLCAQCSVYLSEKYQQQQSLLQLESNIQQLENEKKAAK 464
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,238,428
Number of Sequences: 5004
Number of extensions: 44094
Number of successful extensions: 121
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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