Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12m15f
         (591 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73103-1|CAA97424.1|  117|Caenorhabditis elegans Hypothetical pr...    46   3e-05
U42841-14|AAC48172.3|  469|Caenorhabditis elegans Hypothetical p...    29   2.5  
U39849-8|AAA81050.1|  479|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AL033514-2|CAA22093.2|  233|Caenorhabditis elegans Hypothetical ...    28   4.3  
AF172091-1|AAD48875.1|  233|Caenorhabditis elegans NOB-1B protei...    28   4.3  
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr...    28   5.7  
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in...    28   5.7  
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in...    28   5.7  
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in...    28   5.7  
Z99709-1|CAB16858.1|  488|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z71261-4|CAA95804.1|  126|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical pr...    27   7.5  
X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy ch...    27   7.5  
Z75531-7|CAA99798.2|  316|Caenorhabditis elegans Hypothetical pr...    27   10.0 
U39744-4|AAK18885.4|  389|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>Z73103-1|CAA97424.1|  117|Caenorhabditis elegans Hypothetical
           protein C08F8.1 protein.
          Length = 117

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 31/115 (26%), Positives = 54/115 (46%)
 Frame = +1

Query: 118 DLELKQAFVDLQVLMIETKKTIENIDHQLAVLGRMQMHTNLTQREIDVLPPGTKTYESMA 297
           D E+ +AF DLQ    ET+  I   +    V  +    +  T++ +  L    K Y S+ 
Sbjct: 3   DEEISKAFRDLQFKTNETRMRIVQGEQNKKVNYQKMRISESTKKNLVDLDENLKYYRSVG 62

Query: 298 RMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLIQQKK 462
           RMF+ +D          +      +I+ +  +K  L   L E+E+N+R+LIQ ++
Sbjct: 63  RMFLLTDKPAEISRHEAEAKQSKEKIEAIEKQKDYLEKGLVEAETNLRELIQSRR 117


>U42841-14|AAC48172.3|  469|Caenorhabditis elegans Hypothetical
           protein T17H7.7 protein.
          Length = 469

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
 Frame = +1

Query: 118 DLELKQAFVDLQVLMIETKKTIENIDHQLAVLGRMQMHTNLTQREIDVL---PPGTKTYE 288
           DLE+ Q F  L +   ETK  +E ++  +      +M T+ T  E+  +   P  T T  
Sbjct: 188 DLEVVQLFKKLNLSKEETKSIVERVEQVVREKLMSKMDTSSTTTEVTTVVTTPSTTTTTT 247

Query: 289 SMARMFVQSDLEHIKQNLRQK 351
           S  +    +  E I++ + ++
Sbjct: 248 STTQAPTTTTKEFIEEEIEEE 268


>U39849-8|AAA81050.1|  479|Caenorhabditis elegans Hypothetical
           protein C06A8.5 protein.
          Length = 479

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
 Frame = +1

Query: 313 SDLEHIKQNLRQKTNTLISRIDDLNNR------KVCLNHTLNESESNIRDL 447
           +D+E +K+ LRQK   L    DDL N+      K+ L     E    +RDL
Sbjct: 12  ADVERLKKILRQKDEMLEEMEDDLKNQGKPCSSKLSLEERAQELSEQLRDL 62


>AL033514-2|CAA22093.2|  233|Caenorhabditis elegans Hypothetical
           protein Y75B8A.2a protein.
          Length = 233

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -2

Query: 440 LMLDSLSFKVWFKHTFRLFKS-SMRLINV 357
           LMLD    KVWF+  +R + + S+ +INV
Sbjct: 199 LMLDEKQVKVWFQVCYRQYSAESLEIINV 227


>AF172091-1|AAD48875.1|  233|Caenorhabditis elegans NOB-1B protein
           protein.
          Length = 233

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -2

Query: 440 LMLDSLSFKVWFKHTFRLFKS-SMRLINV 357
           LMLD    KVWF+  +R + + S+ +INV
Sbjct: 199 LMLDEKQVKVWFQVCYRQYSAESLEIINV 227


>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical protein
            T28C6.9 protein.
          Length = 1861

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 18/86 (20%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
 Frame = +1

Query: 277  KTYESMARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLIQQ 456
            +T E    +  +++L+   Q  + +   L+     LNNR + L     E E  ++++ ++
Sbjct: 1216 ETQEEPKELSEKTELDKELQEAKSEIGRLVEIEKVLNNRILSLEDQNLELEERLQEMEEE 1275

Query: 457  KKDE--K*KSASSRIKPNTFKKIDDW 528
              DE  K K   ++++  + +   DW
Sbjct: 1276 LLDEKNKKKEVDAKVEQKSEENWGDW 1301


>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
            interacting proteinprotein 1, isoform d protein.
          Length = 2350

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +1

Query: 307  VQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLIQQKKD 465
            +QS   H  Q L+ +     + ++  NNRK  L + L    S +RD  Q+  D
Sbjct: 1885 IQSKTSHEYQLLKDQLLNTQNELNGANNRKQQLENELLNVRSEVRDYKQRVHD 1937


>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
            interacting proteinprotein 1, isoform b protein.
          Length = 2117

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +1

Query: 307  VQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLIQQKKD 465
            +QS   H  Q L+ +     + ++  NNRK  L + L    S +RD  Q+  D
Sbjct: 1958 IQSKTSHEYQLLKDQLLNTQNELNGANNRKQQLENELLNVRSEVRDYKQRVHD 2010


>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
            interacting proteinprotein 1, isoform a protein.
          Length = 2396

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +1

Query: 307  VQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLIQQKKD 465
            +QS   H  Q L+ +     + ++  NNRK  L + L    S +RD  Q+  D
Sbjct: 1958 IQSKTSHEYQLLKDQLLNTQNELNGANNRKQQLENELLNVRSEVRDYKQRVHD 2010


>Z99709-1|CAB16858.1|  488|Caenorhabditis elegans Hypothetical
           protein C47B2.1 protein.
          Length = 488

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -3

Query: 535 YNSNHLFF*RYWV*FCCWLIFIFHPFFAESNL*CWTHFHL-KCGLN 401
           ++ +HLF  RYW   C +   +F+ F  +     + +F L KC LN
Sbjct: 8   FSLDHLFISRYWFVVCSYCSLLFYFFTVD-----FPYFFLTKCSLN 48


>Z71261-4|CAA95804.1|  126|Caenorhabditis elegans Hypothetical
           protein F21C3.5 protein.
          Length = 126

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
 Frame = +1

Query: 175 KTIENIDHQLAVLGRMQMHTNLTQR-----EIDVLPPGTKTYESMARMFVQSDLEHIKQN 339
           +T+E  D +     R +M   LT+      E+D++   +K Y+ +  + V+ DLE  +  
Sbjct: 15  RTLEK-DREKYFTSRQEMEMRLTESKNVKAELDLMESDSKVYKLIGAVLVRQDLEEARST 73

Query: 340 LRQK 351
           + ++
Sbjct: 74  VEKR 77


>Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical protein
            T18D3.4 protein.
          Length = 1947

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +1

Query: 310  QSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLIQQKKDEK 471
            +SD E+  +    + +TL  +++D       L   + + E+ ++DL  Q  DEK
Sbjct: 1089 KSDAENALRRKETELHTLGMKLEDEQAAVAKLQKGIQQDEARVKDLHDQLADEK 1142


>Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical protein
            T18D3.4 protein.
          Length = 1947

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +1

Query: 310  QSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLIQQKKDEK 471
            +SD E+  +    + +TL  +++D       L   + + E+ ++DL  Q  DEK
Sbjct: 1089 KSDAENALRRKETELHTLGMKLEDEQAAVAKLQKGIQQDEARVKDLHDQLADEK 1142


>X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy chain 2
            protein.
          Length = 1947

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +1

Query: 310  QSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLIQQKKDEK 471
            +SD E+  +    + +TL  +++D       L   + + E+ ++DL  Q  DEK
Sbjct: 1089 KSDAENALRRKETELHTLGMKLEDEQAAVAKLQKGIQQDEARVKDLHDQLADEK 1142


>Z75531-7|CAA99798.2|  316|Caenorhabditis elegans Hypothetical
           protein C54D10.8 protein.
          Length = 316

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 21/101 (20%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
 Frame = +1

Query: 166 ETKKTIENIDHQLAVLGRMQMHTNLTQREIDVLPPGTKTY---ESMARMFVQSDLEHIKQ 336
           ETK+++E +D  L      ++H     +  +      K +   ++  ++ + +  E  ++
Sbjct: 87  ETKRSLEKMDEDLE--RSRELHRIKIAKINNQFMQNKKDFAEQDANRKLEILAQEERAQE 144

Query: 337 NLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLIQQK 459
            LR+  + L   +++L          +NE   NIR L+Q K
Sbjct: 145 RLREIEDQLARDLEELRRCDQQRRQEMNEQMENIRRLLQMK 185


>U39744-4|AAK18885.4|  389|Caenorhabditis elegans Hypothetical
           protein C03F11.4 protein.
          Length = 389

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 22/101 (21%), Positives = 48/101 (47%)
 Frame = +1

Query: 97  IKMAKTVDLELKQAFVDLQVLMIETKKTIENIDHQLAVLGRMQMHTNLTQREIDVLPPGT 276
           IK  K +D +  +A+   Q  M   ++ I+  D         Q   ++ ++E   LPP  
Sbjct: 122 IKKKKKLDAD--KAYELRQEQMKIRQEKIDASDRNKIYRRLAQTAVDMLRKEERKLPPEI 179

Query: 277 KTYESMARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKV 399
           K  +     +V++   +++ NLR +   L +R+D+++ + +
Sbjct: 180 KQLDEDLEYYVENSKFYLRINLRDR--YLETRVDEISEKYI 218


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,268,903
Number of Sequences: 27780
Number of extensions: 244374
Number of successful extensions: 693
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)