Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12m15f
         (591 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   3.9  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    22   5.2  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    22   5.2  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    22   5.2  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    22   5.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.2  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    21   9.0  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 307 VQSDLEHIKQNLRQK 351
           +Q DL+HI QN+  K
Sbjct: 171 IQIDLKHINQNMGDK 185


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
 Frame = +1

Query: 424 SESNIRDLIQQKKDEK*KSASSRIKP-----NTFKKIDDWNYNYPHEI 552
           S+   RD  ++++  + K  SS +       N +KK+  +N NY  +I
Sbjct: 285 SKERSRDRTERERSREPKIISSLLNNTIHNNNNYKKLQYYNINYIEQI 332


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
 Frame = +1

Query: 424 SESNIRDLIQQKKDEK*KSASSRIKP-----NTFKKIDDWNYNYPHEI 552
           S+   RD  ++++  + K  SS +       N +KK+  +N NY  +I
Sbjct: 296 SKERSRDRTERERSREPKIISSLLNNTIHNNNNYKKLQYYNINYIEQI 343


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
 Frame = +1

Query: 424 SESNIRDLIQQKKDEK*KSASSRIKP-----NTFKKIDDWNYNYPHEI 552
           S+   RD  ++++  + K  SS +       N +KK+  +N NY  +I
Sbjct: 296 SKERSRDRTERERSREPKIISSLLNNTIHNNNNYKKLQYYNINYIEQI 343


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
 Frame = +1

Query: 424 SESNIRDLIQQKKDEK*KSASSRIKP-----NTFKKIDDWNYNYPHEI 552
           S+   RD  ++++  + K  SS +       N +KK+  +N NY  +I
Sbjct: 285 SKERSRDRTERERSREPKIISSLLNNTIHNNNNYKKLQYYNINYIEQI 332


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 115  VDLELKQAFVDLQVLMIETKKTIEN 189
            V+ +L Q ++DL+V   ETK  +E+
Sbjct: 1040 VNDQLGQLYLDLEVEGFETKLVLED 1064


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 364 ISRIDDLNNRKVCLNHTLNESESNIRDL 447
           +S +      KV L+HT+N  ++ +R L
Sbjct: 6   LSNVATFRLSKVMLDHTINSKKTIMRIL 33


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,694
Number of Sequences: 438
Number of extensions: 2878
Number of successful extensions: 20
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)