Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12m14r
         (712 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236124-1|AAF68382.1|  107|Anopheles gambiae thioredoxin 1 prot...    62   2e-11
AF164153-1|AAD47077.1|  131|Anopheles gambiae ribosomal protein ...    24   5.4  
AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    23   9.5  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    23   9.5  

>AF236124-1|AAF68382.1|  107|Anopheles gambiae thioredoxin 1
           protein.
          Length = 107

 Score = 62.1 bits (144), Expect = 2e-11
 Identities = 26/43 (60%), Positives = 36/43 (83%)
 Frame = -1

Query: 712 VGVKVDVDECEDIASEYNINSMPTFVFVKNGKKLDEFSGANVD 584
           V VKVDVDECE++A++YNI SMPTF+F+K  + + +FSGAN +
Sbjct: 54  VVVKVDVDECEELAAQYNIASMPTFLFIKRKEVVGQFSGANAE 96


>AF164153-1|AAD47077.1|  131|Anopheles gambiae ribosomal protein S17
           protein.
          Length = 131

 Score = 23.8 bits (49), Expect = 5.4
 Identities = 19/68 (27%), Positives = 33/68 (48%)
 Frame = +3

Query: 114 T*KKKNIVILVTYKSF*KHDGNLSYTLISIGEIIHLSKPDKNKNKNITIHTLKFLSNHLV 293
           T KK + VI+  Y +    D + +  ++    II  +KP +NK      H +K L +  V
Sbjct: 8   TIKKASKVIIEKYYTRLTMDFDTNKRIVEEVAIIP-TKPLRNKIAGFVTHLMKRLRHSQV 66

Query: 294 KKTKIEIQ 317
           +   I++Q
Sbjct: 67  RGISIKLQ 74


>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 9.5
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +3

Query: 540 LVSIYLCLRIVVLSLSTLAPE 602
           LVSI +C+ +VVL++   +P+
Sbjct: 316 LVSISICVTVVVLNVHFRSPQ 336


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 9.5
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +3

Query: 540 LVSIYLCLRIVVLSLSTLAPE 602
           LVSI +C+ +VVL++   +P+
Sbjct: 316 LVSISICVTVVVLNVHFRSPQ 336


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 676,439
Number of Sequences: 2352
Number of extensions: 13036
Number of successful extensions: 25
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 72758970
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)