Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12m13r
         (376 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein S25|Schizosacc...    43   1e-05
SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein S25|Sc...    43   1e-05
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    29   0.31 
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    29   0.31 
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    27   0.73 
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    27   0.96 
SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy...    25   2.9  
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc...    25   3.9  
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         24   6.8  
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   6.8  
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy...    24   9.0  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    24   9.0  

>SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 88

 Score = 43.2 bits (97), Expect = 1e-05
 Identities = 18/40 (45%), Positives = 30/40 (75%)
 Frame = -2

Query: 219 LFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRAL 100
           +FDK   +++ KEVP +K I+ +V+ +R+K+ GSLAR A+
Sbjct: 21  VFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAI 60


>SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 43.2 bits (97), Expect = 1e-05
 Identities = 18/40 (45%), Positives = 30/40 (75%)
 Frame = -2

Query: 219 LFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRAL 100
           +FDK   +++ KEVP +K I+ +V+ +R+K+ GSLAR A+
Sbjct: 21  VFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAI 60


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 28.7 bits (61), Expect = 0.31
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +2

Query: 95  SMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNTWLFNLSRTFPLDHFFFL 274
           S+SA        FNL+    GV ++  G S  +F+ + + +  W F +    P+D   FL
Sbjct: 139 SLSADTIGRRWAFNLTFLFTGVFAVIAGASP-NFASICVFDALWSFGVGGNLPVDSAIFL 197

Query: 275 -ALP 283
            ALP
Sbjct: 198 EALP 201


>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 28.7 bits (61), Expect = 0.31
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +3

Query: 198 HMWVYQTTPGCSTCHELFLWTTSSSWLCRHRILPSSSV 311
           +M  YQ TP     HE   WT SS  L  H + PS+ +
Sbjct: 152 YMRAYQLTPEFMAAHEEKTWTASS--LNSHNLTPSNVI 187


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 27.5 bits (58), Expect = 0.73
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 191  SFSYVGLSNNTWLFNLSRTFPLDHFFFLALPPP 289
            SF Y  L NN++L  +S +   ++ F++  PPP
Sbjct: 1008 SFIYGSLQNNSFLSRVSPSSLEENVFYIQHPPP 1040


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 27.1 bits (57), Expect = 0.96
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 317 KKHRRRRKDPVAAKPRRRSGPKEKFVTS*TTRC 219
           K HR    DP+   P RR GP  + V +   +C
Sbjct: 203 KVHRPNHFDPLVKLPTRRRGPGRRPVVALAMKC 235


>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 613

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = +2

Query: 134 NLSDTTAGVISLYCGTSLYSFSYVGLSNNT---WLFNLSRTFPLDHF 265
           +LSD    VIS   G + Y F  V LS+ T   W  N +  +P+  F
Sbjct: 222 SLSDYWGRVISRTLGDTTYGFPNVSLSSITSQEWYRNANFPYPIITF 268


>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 150

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +2

Query: 158 VISLYCGTSLYSFSYV-GLSNNTWLFNLSRTFPLDHFFFLALPPP 289
           V+ + C  +L  F ++ G+ N         T P  +F+ L  PPP
Sbjct: 37  VVVIICIAALIFFFFIIGIINRRRTKKGQATIPFTNFYPLTAPPP 81


>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 212 SNNTWLFNLSRTFPLDHFFFLAL 280
           S N+W+F L  TF     F+L+L
Sbjct: 316 SRNSWIFTLLLTFTQLTIFYLSL 338


>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 270 SWLCRHRILPSSSVFFEAVW 329
           +WL +  ++PSSS F  + W
Sbjct: 131 AWLEKQELVPSSSNFLNSFW 150


>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 204 TYEKLYKEVPQYKLITPAVVS 142
           TY+K+Y E P  K++   + S
Sbjct: 96  TYKKIYNEYPPTKILVQEIAS 116


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 73  MRPFSLXFDECSSRQGTSDL*PFRYDSRCD*LVLWDF 183
           +RP S   ++C   QG++   PF  D+      LWDF
Sbjct: 263 LRPTSALNEKCIELQGSAHKCPFLQDN----TQLWDF 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,529,396
Number of Sequences: 5004
Number of extensions: 30243
Number of successful extensions: 126
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)