Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12m13r
(376 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0339 - 22400534-22400647,22401264-22401398,22401491-224015... 69 1e-12
08_02_1576 + 27965862-27965864,27965952-27966026,27966113-279662... 69 1e-12
11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,249... 56 1e-08
03_05_0586 - 25875703-25876332,25876426-25876713,25877064-258771... 31 0.29
03_02_0025 + 5084003-5084303,5084449-5084639,5084793-5084873,508... 28 2.7
10_06_0139 - 11139004-11139031,11139300-11141017,11141408-111414... 27 3.6
06_03_1117 + 27750291-27750338,27751360-27751812,27751987-277521... 27 3.6
04_03_0989 - 21475147-21475361,21477029-21477074,21477364-21479292 27 3.6
04_03_0916 + 20794240-20794246,20794585-20796545 27 3.6
02_04_0562 - 23886272-23886357,23886456-23886571,23887045-238871... 27 3.6
02_02_0618 - 12190727-12191698 27 3.6
10_05_0041 - 8469769-8470164 27 4.8
03_05_0742 + 27310404-27310457,27311281-27311286,27311350-273114... 27 4.8
12_02_1263 + 27423411-27423464,27423985-27424104,27424200-274242... 27 6.3
10_01_0146 - 1719997-1720386,1721498-1721515 27 6.3
02_03_0349 + 18010414-18014283 27 6.3
11_06_0621 + 25587476-25587604,25588230-25588423,25588800-255888... 26 8.4
05_01_0049 - 337132-337488,337613-337765,337924-338551,338617-33... 26 8.4
04_04_0176 - 23329589-23331043 26 8.4
02_05_0114 + 25958834-25961296 26 8.4
>09_06_0339 -
22400534-22400647,22401264-22401398,22401491-22401565,
22401646-22401648
Length = 108
Score = 68.9 bits (161), Expect = 1e-12
Identities = 30/45 (66%), Positives = 39/45 (86%)
Frame = -2
Query: 234 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRAL 100
+NN VLFD+ TY+KL EVP+YK ITP+V+SERL++ GSLARRA+
Sbjct: 37 VNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAM 81
>08_02_1576 +
27965862-27965864,27965952-27966026,27966113-27966247,
27967080-27967193
Length = 108
Score = 68.9 bits (161), Expect = 1e-12
Identities = 30/45 (66%), Positives = 39/45 (86%)
Frame = -2
Query: 234 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRAL 100
+NN VLFD+ TY+KL EVP+YK ITP+V+SERL++ GSLARRA+
Sbjct: 37 VNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAI 81
>11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,
2496476-2496577,2496853-2497003,2497173-2497222,
2497432-2497557,2497761-2497863,2498104-2498204,
2498540-2498677,2498768-2498911,2499028-2499103,
2499224-2499309,2499432-2499560,2500572-2500674,
2500776-2500843,2500912-2501013,2501432-2501527,
2501723-2501848,2502152-2502254,2502427-2502569,
2503017-2503154,2503248-2503391,2503535-2503610,
2503883-2503968,2504135-2504212,2505180-2505254,
2505362-2505496,2506240-2506272,2507886-2507905,
2508570-2508666,2508899-2509000,2510612-2510725
Length = 1126
Score = 55.6 bits (128), Expect = 1e-08
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = -2
Query: 234 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLK 130
+NN VLFDK TY+KL EVP+YK ITP+V+SERL+
Sbjct: 971 VNNSVLFDKATYDKLLSEVPKYKQITPSVLSERLR 1005
>03_05_0586 -
25875703-25876332,25876426-25876713,25877064-25877194,
25877299-25877812
Length = 520
Score = 31.1 bits (67), Expect = 0.29
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -1
Query: 343 REGFGQTASKNTEEEGRIRWRQSQEEEVVQRKSS*QVEQPGV 218
R G G + + E G+ +WR+ +EEE Q+K + E+ V
Sbjct: 345 RGGRGGESEERRRERGKGKWREEEEEEEEQQKGQEEEEEEQV 386
>03_02_0025 +
5084003-5084303,5084449-5084639,5084793-5084873,
5084972-5085319,5085409-5086293
Length = 601
Score = 27.9 bits (59), Expect = 2.7
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -1
Query: 376 AFQFKDAAQEGREGFGQTASKNTEEEGRIRWRQSQEEE 263
A + + A+E EG G K EEE R R R+ +EEE
Sbjct: 461 AEELERKAEEEEEGGGGKGEKEREEEER-RQREKEEEE 497
>10_06_0139 -
11139004-11139031,11139300-11141017,11141408-11141477,
11142520-11143361
Length = 885
Score = 27.5 bits (58), Expect = 3.6
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 151 CRI*KVKGPRFPGEKSTHRXLGKKVSSNR 65
CRI +VK R P H+ +GK VS R
Sbjct: 110 CRIGRVKVARLPKRLKRHQQMGKMVSQFR 138
>06_03_1117 +
27750291-27750338,27751360-27751812,27751987-27752161,
27752227-27752551,27752705-27752786,27752820-27752889,
27753341-27753420,27753514-27753750
Length = 489
Score = 27.5 bits (58), Expect = 3.6
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -1
Query: 337 GFGQTASKNTEEEGRIRWRQSQEEEVVQRKSS*QVEQPG 221
GFG S N+ +RWR + +++ Q Q ++PG
Sbjct: 427 GFGIAISANSMLVEYLRWRSRRNQQLAQTVDDGQRQEPG 465
>04_03_0989 - 21475147-21475361,21477029-21477074,21477364-21479292
Length = 729
Score = 27.5 bits (58), Expect = 3.6
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 246 LFLWTTSSSWLCRHRILPSSSVFFEAVWPKPSRPSWAASL 365
+F W S L R+R+L + F+A+ P + SWAA L
Sbjct: 65 VFTWNCMVSGLIRNRMLAEARKVFDAM-PVRNSVSWAALL 103
>04_03_0916 + 20794240-20794246,20794585-20796545
Length = 655
Score = 27.5 bits (58), Expect = 3.6
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +3
Query: 144 IRQQV*LACTVGLPCTVSH-MWVYQTTPGCSTCHELFLWTTSSSWLCRHRI 293
I Q + L +G C + VY+ P S H+LF T+ +W R+ I
Sbjct: 399 IIQHINLVKLIGFCCEGGRRLLVYEHMPNRSLDHQLFQTNTTLTWNIRYEI 449
>02_04_0562 -
23886272-23886357,23886456-23886571,23887045-23887127,
23887683-23887829,23887946-23887993,23888166-23888384,
23889370-23889541,23889636-23889700,23890386-23890512,
23891358-23891450,23891520-23891629,23891722-23891868,
23892161-23892473,23892580-23893178
Length = 774
Score = 27.5 bits (58), Expect = 3.6
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 11 IIALGRTRVRSPAHGVGLP 67
++ALG +R PAHG+ LP
Sbjct: 71 LLALGNGLLRRPAHGISLP 89
>02_02_0618 - 12190727-12191698
Length = 323
Score = 27.5 bits (58), Expect = 3.6
Identities = 24/74 (32%), Positives = 30/74 (40%)
Frame = +2
Query: 5 DWIIALGRTRVRSPAHGVGLPV**DLFP*XSMSALLAREPRTFNLSDTTAGVISLYCGTS 184
D I +G+ R R AH L +F A++A PRT + D AGV L
Sbjct: 189 DVTIYVGKERFR--AHKCILAARSSVFRALFFGAMIAETPRTIEIEDMEAGVFRL----- 241
Query: 185 LYSFSYVGLSNNTW 226
L F Y TW
Sbjct: 242 LLHFMYNDSLPETW 255
>10_05_0041 - 8469769-8470164
Length = 131
Score = 27.1 bits (57), Expect = 4.8
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -1
Query: 358 AAQEGREGFGQTASKNTEEEGRIRWRQSQEEEV 260
A + GREG G+ +S ++ R RW+ +++
Sbjct: 31 ARERGREGGGEASSTTIDDGERRRWQDGLRDDL 63
>03_05_0742 +
27310404-27310457,27311281-27311286,27311350-27311469,
27311597-27311695,27311787-27311795,27311843-27311980,
27312084-27312218,27312308-27312517,27312592-27312798,
27312891-27313010,27313079-27313198,27313279-27313401,
27313501-27313605,27313764-27313908,27314658-27315148,
27315236-27315268,27315556-27315637,27315747-27315907,
27316021-27316206,27316294-27316476,27316573-27316751,
27317009-27317105
Length = 1000
Score = 27.1 bits (57), Expect = 4.8
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +2
Query: 131 FNLSDTTAGVISLYCGTSLYSFSYVGL--SNNTWLFNLSRTFPLDHFFFL 274
F ++ A +I++Y + S +G + WL+NL FPLD FL
Sbjct: 843 FFVAQLIATLIAVYANWAFTSIKGIGWGWAGIVWLYNLVFYFPLDIIKFL 892
>12_02_1263 +
27423411-27423464,27423985-27424104,27424200-27424298,
27424405-27424542,27424647-27424706,27424865-27425044,
27425132-27425338,27425415-27425534,27425609-27425728,
27425819-27425941,27426074-27426178,27426379-27426523,
27426967-27427131,27427228-27427466,27427553-27427585,
27427894-27427975,27428100-27428260,27428422-27428607,
27428700-27428882,27428969-27429147,27429386-27429482
Length = 931
Score = 26.6 bits (56), Expect = 6.3
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +2
Query: 131 FNLSDTTAGVISLYCGTSLYSFSYVGL--SNNTWLFNLSRTFPLDHFFFL 274
F ++ A +I++Y + S +G + WL+NL FPLD FL
Sbjct: 774 FLVAQLIATLIAVYADWAFTSIKGIGWGWAGIVWLYNLIFYFPLDIIKFL 823
>10_01_0146 - 1719997-1720386,1721498-1721515
Length = 135
Score = 26.6 bits (56), Expect = 6.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 329 PNSLKKHRRRRKDPVAAKPRRRS 261
P+ + RRRR +P +PRRR+
Sbjct: 83 PDDGGQRRRRRSEPATTQPRRRA 105
>02_03_0349 + 18010414-18014283
Length = 1289
Score = 26.6 bits (56), Expect = 6.3
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 210 KPTYEKLYKEVPQYKLITPAVVSERL 133
KPT E+L K +PQ K++ AV E +
Sbjct: 39 KPTRERLEKLLPQIKVVLDAVDMEHI 64
>11_06_0621 +
25587476-25587604,25588230-25588423,25588800-25588874,
25589434-25591852
Length = 938
Score = 26.2 bits (55), Expect = 8.4
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 171 TVGLPCTVSHMWVYQTTPGCSTCHELFLWTTSSSWLCRHRILPS 302
T PC++S M V C TC+++ S +CR ++PS
Sbjct: 264 TCATPCSLSFM-VDCLIKACITCYDVQATICLFSGICRLGVVPS 306
>05_01_0049 -
337132-337488,337613-337765,337924-338551,338617-338852,
339563-339577
Length = 462
Score = 26.2 bits (55), Expect = 8.4
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = +3
Query: 231 STCHELFLWTTSSSWLCRHRILPSSSVFF--EAVWPKPSRP 347
STCH++ L S WL L S + F E VW P P
Sbjct: 261 STCHKMQLPFKLSDWLSTVPTLTSLHLDFQDEMVWILPEEP 301
>04_04_0176 - 23329589-23331043
Length = 484
Score = 26.2 bits (55), Expect = 8.4
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 346 GREGFGQTASKNTEEEGRIRWRQSQEEEVVQR 251
GR+GF + EE GR R R +EE +R
Sbjct: 405 GRDGFDLSRKHGHEERGRYRPRVLEEEREHER 436
>02_05_0114 + 25958834-25961296
Length = 820
Score = 26.2 bits (55), Expect = 8.4
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 171 TVGLPCTVSHMWVYQTTPGCSTCHELFLWTTSSSWLCRHRILPS 302
T PC++S M V C TC+++ S +CR ++PS
Sbjct: 146 TCATPCSLSFM-VDCLIKACITCYDVQATICLFSGICRLGVVPS 188
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,509,524
Number of Sequences: 37544
Number of extensions: 212164
Number of successful extensions: 695
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -