Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12m11r
(655 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0810 + 11429776-11429985,11430003-11430935 34 0.11
07_03_1473 + 26756338-26757583,26759067-26759472,26760867-267609... 31 0.80
05_01_0410 - 3234455-3234466,3234851-3234950,3235037-3235161,323... 31 0.80
01_03_0161 + 13337265-13337297,13337880-13338017,13338211-133383... 31 0.80
03_02_0811 + 11437654-11438958 28 5.6
03_02_0809 + 11419318-11420493 28 5.6
01_05_0573 + 23359968-23361044,23361112-23361255,23361458-23361841 28 5.6
11_06_0121 - 20330511-20330707,20332250-20332343 28 7.5
04_04_1439 + 33614112-33614123,33614278-33615649,33615705-33616141 27 9.9
04_03_0684 - 18670697-18670933,18671003-18671102,18671214-186712... 27 9.9
>03_02_0810 + 11429776-11429985,11430003-11430935
Length = 380
Score = 33.9 bits (74), Expect = 0.11
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +1
Query: 442 TQIHTQIFHGKF*ITTARLQLFLSLFGVTLSVPALKFACGLFRN 573
T ++T ++ K +TT +++ FG SVP + F CGLF N
Sbjct: 111 TCVYTYYYNDKS-VTTGLIEVDKFTFGAGASVPGVAFGCGLFNN 153
>07_03_1473 +
26756338-26757583,26759067-26759472,26760867-26760930,
26760975-26761055,26763350-26763588,26763689-26763947,
26764359-26764538,26764937-26765092,26765174-26765350
Length = 935
Score = 31.1 bits (67), Expect = 0.80
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -2
Query: 624 KPQRYNGGRALEDFIKYVSEQATSELKGWDRKGNAKQGKEE 502
K + NG ++ + SE+A+S L + KG+ QGKEE
Sbjct: 323 KHVKINGNLVIKSIV--ASEKASSRLSNYGEKGSGNQGKEE 361
>05_01_0410 -
3234455-3234466,3234851-3234950,3235037-3235161,
3235244-3235400,3235644-3235735,3235828-3235855,
3235949-3236066,3236411-3236466,3236556-3236653,
3236864-3236948,3237428-3237600
Length = 347
Score = 31.1 bits (67), Expect = 0.80
Identities = 12/27 (44%), Positives = 21/27 (77%)
Frame = -2
Query: 642 PKDSSKKPQRYNGGRALEDFIKYVSEQ 562
PK +K + Y+GGR L+DF+K+++E+
Sbjct: 230 PK-GNKAGEDYDGGRELDDFVKFINEK 255
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -2
Query: 654 IFWKPKDSSKKPQRYNGGRALEDFIKYVSEQATSELK 544
I W PK S +P++Y G R E +YV+ +A + +K
Sbjct: 107 IQWFPK-GSLEPKKYEGQRTAEALAEYVNSEAATNVK 142
>01_03_0161 +
13337265-13337297,13337880-13338017,13338211-13338308,
13338395-13338450,13338664-13338781,13338889-13338916,
13339021-13339112,13339321-13339477,13339569-13339693,
13339785-13339884,13339991-13340059
Length = 337
Score = 31.1 bits (67), Expect = 0.80
Identities = 12/27 (44%), Positives = 21/27 (77%)
Frame = -2
Query: 642 PKDSSKKPQRYNGGRALEDFIKYVSEQ 562
PK +K + Y+GGR L+DF+K+++E+
Sbjct: 201 PK-GNKAGEDYDGGRELDDFVKFINEK 226
>03_02_0811 + 11437654-11438958
Length = 434
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 442 TQIHTQIFHGKF*ITTARLQLFLSLF-GVTLSVPALKFACGLFRN 573
T ++T + K +TT L++ F G SVP + F CGLF N
Sbjct: 160 TCVYTYSYGDKS-VTTGFLEVDKFTFVGAGASVPGVAFGCGLFNN 203
>03_02_0809 + 11419318-11420493
Length = 391
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 442 TQIHTQIFHGKF*ITTARLQLFLSLF-GVTLSVPALKFACGLFRN 573
T ++T + K +TT L++ F G SVP + F CGLF N
Sbjct: 113 TCVYTYSYGDKS-VTTGFLEVDKFTFVGAGASVPGVAFGCGLFNN 156
>01_05_0573 + 23359968-23361044,23361112-23361255,23361458-23361841
Length = 534
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Frame = +1
Query: 256 KVILDLLSVNMMVNECNITIARGTTM----SLYPKNAFHICF--PLDRY 384
K++ L SV M +CNIT+ GT S ++AF P DRY
Sbjct: 485 KLVKPLSSVKMASGDCNITVVEGTVHDEEDSCCLRDAFDFSIDDPFDRY 533
>11_06_0121 - 20330511-20330707,20332250-20332343
Length = 96
Score = 27.9 bits (59), Expect = 7.5
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +2
Query: 431 IHPSHKYTRR-SFMESFESQQHAYNSSFPCLALPFLSQPLSSLVACSETYLMKSSRARPP 607
+H ++TRR F+++ A +S +ALP+ + L++ + S T R++PP
Sbjct: 10 LHLFGQHTRRMEFIDNEMPSGTAMPTSVEGVALPWPHESLTTPIDTSNTASSLEPRSKPP 69
Query: 608 LYL*GFL 628
Y G L
Sbjct: 70 NYAMGVL 76
>04_04_1439 + 33614112-33614123,33614278-33615649,33615705-33616141
Length = 606
Score = 27.5 bits (58), Expect = 9.9
Identities = 6/25 (24%), Positives = 17/25 (68%)
Frame = -2
Query: 363 DMKSILWVQRHCRSSCNSNVAFINH 289
D++++LW++ + + C S + ++H
Sbjct: 268 DLRAVLWLEEYLTAQCKSTLVVVSH 292
>04_03_0684 -
18670697-18670933,18671003-18671102,18671214-18671266,
18671664-18671810,18671901-18672031,18673064-18673088,
18673201-18673305,18673941-18674054,18674900-18674992,
18675101-18675193,18675951-18676057,18676442-18676490,
18677140-18677253,18677728-18677787,18677887-18677955,
18679154-18679255,18679338-18679366,18679450-18679732,
18680399-18680752
Length = 754
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +2
Query: 461 SFMESFESQQHAYNSSFPCLALPFLSQPLSSLVACSETYLMKSSRAR 601
+F E F S AY+ C +P L++ L++++ TY++ ++R
Sbjct: 269 AFEEKFFSTLPAYHGLTHCCGVPQLAKKLNTILLKHITYMLPGLKSR 315
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,828,178
Number of Sequences: 37544
Number of extensions: 338291
Number of successful extensions: 795
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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