Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12m09r
         (730 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal p...   349   4e-98
EF519382-1|ABP68491.1|  493|Anopheles gambiae LRIM1 protein.           28   0.34 
AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking p...    27   0.79 
AY344814-1|AAR03842.1|  286|Anopheles gambiae LRR Toll protein.        27   0.79 
AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript...    24   5.5  
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    23   7.3  
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    23   7.3  

>X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal
           protein homologue protein.
          Length = 269

 Score =  349 bits (859), Expect = 4e-98
 Identities = 163/214 (76%), Positives = 188/214 (87%)
 Frame = -1

Query: 706 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 527
           VDPFTRKDWYDVKAP+MF  RQ G TLVNRTQGTKIAS+GLKGRVFEVSLADLQ + DAE
Sbjct: 22  VDPFTRKDWYDVKAPNMFKNRQSGKTLVNRTQGTKIASDGLKGRVFEVSLADLQNEPDAE 81

Query: 526 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 347
           RSFRKF+L+AE V GR+VL NFHGM LTTDKLR MV KWQTLIE ++DVKTTDG++LRVF
Sbjct: 82  RSFRKFKLVAESVNGRDVLTNFHGMALTTDKLRSMVNKWQTLIECSVDVKTTDGFMLRVF 141

Query: 346 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIE 167
           CIGFT KDS+SQRKTCYAQH+Q++ IR KM  II R++T+++L+ VV KL+PDSIAKDIE
Sbjct: 142 CIGFTIKDSMSQRKTCYAQHSQIKNIRAKMTAIIKREITSTDLKGVVEKLLPDSIAKDIE 201

Query: 166 KACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 65
           KAC  +YPL DV IRKVKVLK+PRF++S LMELH
Sbjct: 202 KACQVVYPLHDVYIRKVKVLKKPRFDLSSLMELH 235


>EF519382-1|ABP68491.1|  493|Anopheles gambiae LRIM1 protein.
          Length = 493

 Score = 27.9 bits (59), Expect = 0.34
 Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
 Frame = -1

Query: 565 VSLADLQADTDA-ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQT 404
           V+LA+L A +D  E    ++  I + +QG+ V      +DL+++KL +M  ++Q+
Sbjct: 181 VNLAELAASSDTLEHLNLQYNFIYD-IQGQVVFAKLKTLDLSSNKLAFMGPEFQS 234


>AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking
           protein.
          Length = 932

 Score = 26.6 bits (56), Expect = 0.79
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 149 LPSARCLHPKGESVEEAPFRDLEVDGT 69
           +P   C H  G ++E+A    LE DGT
Sbjct: 557 MPPKGCSHDDGPALEKAQLYQLESDGT 583


>AY344814-1|AAR03842.1|  286|Anopheles gambiae LRR Toll protein.
          Length = 286

 Score = 26.6 bits (56), Expect = 0.79
 Identities = 16/55 (29%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
 Frame = -1

Query: 565 VSLADLQADTDA-ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQT 404
           V+LA+L A +D  E    ++  + + +QG+ V      +DL+++KL +M  ++Q+
Sbjct: 106 VNLAELAASSDTLEHLNLQYNFMYD-IQGQVVFAKLKTLDLSSNKLAFMGPEFQS 159


>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1009

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +2

Query: 119 LSDANIAQRVDAMAGLLDVLGNGVRNQLV 205
           L+ AN  QR++    L D++G+  RN+++
Sbjct: 560 LAIANALQRINTPKYLYDIIGDYFRNRVL 588


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 12/39 (30%), Positives = 15/39 (38%)
 Frame = +1

Query: 94  NGASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSP 210
           NG    +   G  H   G    RPSR    ++  S C P
Sbjct: 146 NGLGLEVLNIGTSHTFRGCGSARPSRIDVAFASPSICRP 184


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 621 LTSVVPTCLLLNIDGALTSYQSLRVNGSTSSS 716
           + S+VP CL+L  D    S+  +   G + SS
Sbjct: 808 IASMVPICLILAEDSECCSFSGVSNAGLSRSS 839


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 777,055
Number of Sequences: 2352
Number of extensions: 17370
Number of successful extensions: 50
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 74428737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)