Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12m09r
(730 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF034971-1|AAC62117.1| 268|Drosophila melanogaster ribosomal pr... 346 2e-95
AE014135-4|AAF59372.1| 268|Drosophila melanogaster CG2168-PA, i... 346 2e-95
Y10115-1|CAA71201.1| 270|Drosophila melanogaster ribosomal prot... 326 2e-89
AE014135-5|AAN06541.1| 218|Drosophila melanogaster CG2168-PB, i... 276 3e-74
AY070949-1|AAL48571.1| 217|Drosophila melanogaster RE04220p pro... 266 3e-71
AE014135-6|AAN06542.1| 163|Drosophila melanogaster CG2168-PD, i... 202 4e-52
AE013599-2921|AAF57537.1| 632|Drosophila melanogaster CG15904-P... 29 8.6
>AF034971-1|AAC62117.1| 268|Drosophila melanogaster ribosomal
protein S3a protein.
Length = 268
Score = 346 bits (850), Expect = 2e-95
Identities = 169/240 (70%), Positives = 192/240 (80%), Gaps = 5/240 (2%)
Frame = -1
Query: 706 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 527
VDPF+RKDWYDVKAP+MF RQ+G TLVNRTQG +IAS+ LKGRVFEVSLADLQ D D E
Sbjct: 22 VDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDPE 81
Query: 526 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 347
RSFRKFRLIAE VQ RNVLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVF
Sbjct: 82 RSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVF 141
Query: 346 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIE 167
CIGFT KD SQRKTCYAQ +QVR IR +M +IIT +V+ ++L+++VNKL DSIAKDIE
Sbjct: 142 CIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIE 201
Query: 166 KACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXXXXXXXXXXGDKSE-----RPEGYE 2
K+C IYPL DV IRKVKVLK+PRF++SKL+ELH SE RPEGYE
Sbjct: 202 KSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVEAVVSSEGAVIDRPEGYE 261
>AE014135-4|AAF59372.1| 268|Drosophila melanogaster CG2168-PA,
isoform A protein.
Length = 268
Score = 346 bits (850), Expect = 2e-95
Identities = 169/240 (70%), Positives = 192/240 (80%), Gaps = 5/240 (2%)
Frame = -1
Query: 706 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 527
VDPF+RKDWYDVKAP+MF RQ+G TLVNRTQG +IAS+ LKGRVFEVSLADLQ D D E
Sbjct: 22 VDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDPE 81
Query: 526 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 347
RSFRKFRLIAE VQ RNVLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVF
Sbjct: 82 RSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVF 141
Query: 346 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIE 167
CIGFT KD SQRKTCYAQ +QVR IR +M +IIT +V+ ++L+++VNKL DSIAKDIE
Sbjct: 142 CIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIE 201
Query: 166 KACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXXXXXXXXXXGDKSE-----RPEGYE 2
K+C IYPL DV IRKVKVLK+PRF++SKL+ELH SE RPEGYE
Sbjct: 202 KSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVEAVVSSEGAVIDRPEGYE 261
>Y10115-1|CAA71201.1| 270|Drosophila melanogaster ribosomal protein
S3a protein.
Length = 270
Score = 326 bits (800), Expect = 2e-89
Identities = 157/216 (72%), Positives = 180/216 (83%), Gaps = 2/216 (0%)
Frame = -1
Query: 706 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLA-DLQADTDA 530
VDPF+RKDWYDVKAP+MF RQ+G TLVNRTQG +IAS+ KGRVFEVSL DLQ D D
Sbjct: 22 VDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYFKGRVFEVSLVPDLQKDIDP 81
Query: 529 ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 350
E SFRKFRLIAE VQ RNVLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRV
Sbjct: 82 EHSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRV 141
Query: 349 FCIGFTNKDSLSQRKTCYAQHTQVRAIRK-KMCEIITRDVTNSELREVVNKLIPDSIAKD 173
FCIGFT KD SQRKTCYA +QVR IR +M +IIT +V+ ++L+++VNKL DSIAKD
Sbjct: 142 FCIGFTAKDQQSQRKTCYAHESQVRKIRSGRMTDIITNEVSGADLKQLVNKLALDSIAKD 201
Query: 172 IEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 65
IEK+C IYPL DV IRKVKVLK+PRF++SKL+ELH
Sbjct: 202 IEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELH 237
>AE014135-5|AAN06541.1| 218|Drosophila melanogaster CG2168-PB,
isoform B protein.
Length = 218
Score = 276 bits (676), Expect = 3e-74
Identities = 137/198 (69%), Positives = 155/198 (78%), Gaps = 5/198 (2%)
Frame = -1
Query: 580 GRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTL 401
GRVFEVSLADLQ D D ERSFRKFRLIAE VQ RNVLCNFHGMDLTTDK R MVKKWQTL
Sbjct: 14 GRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTL 73
Query: 400 IEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSE 221
IEA ++ KT DGY+LRVFCIGFT KD SQRKTCYAQ +QVR IR +M +IIT +V+ ++
Sbjct: 74 IEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGAD 133
Query: 220 LREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXXXXXXXX 41
L+++VNKL DSIAKDIEK+C IYPL DV IRKVKVLK+PRF++SKL+ELH
Sbjct: 134 LKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSV 193
Query: 40 XXGDKSE-----RPEGYE 2
SE RPEGYE
Sbjct: 194 EAVVSSEGAVIDRPEGYE 211
>AY070949-1|AAL48571.1| 217|Drosophila melanogaster RE04220p
protein.
Length = 217
Score = 266 bits (651), Expect = 3e-71
Identities = 124/167 (74%), Positives = 143/167 (85%)
Frame = -1
Query: 706 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 527
VDPF+RKDWYDVKAP+MF RQ+G TLVNRTQG +IAS+ LKGRVFEVSLADLQ D D E
Sbjct: 22 VDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDPE 81
Query: 526 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 347
RSFRKFRLIAE VQ RNVLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVF
Sbjct: 82 RSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVF 141
Query: 346 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVV 206
CIGFT KD SQRKTCYAQ +QVR IR +M +IIT +V+ ++L++++
Sbjct: 142 CIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLL 188
>AE014135-6|AAN06542.1| 163|Drosophila melanogaster CG2168-PD,
isoform D protein.
Length = 163
Score = 202 bits (493), Expect = 4e-52
Identities = 100/156 (64%), Positives = 118/156 (75%), Gaps = 5/156 (3%)
Frame = -1
Query: 454 MDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVR 275
MDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD SQRKTCYAQ +QVR
Sbjct: 1 MDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVR 60
Query: 274 AIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPR 95
IR +M +IIT +V+ ++L+++VNKL DSIAKDIEK+C IYPL DV IRKVKVLK+PR
Sbjct: 61 KIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPR 120
Query: 94 FEISKLMELHXXXXXXXXXXGDKSE-----RPEGYE 2
F++SKL+ELH SE RPEGYE
Sbjct: 121 FDVSKLLELHGDGGGKSVEAVVSSEGAVIDRPEGYE 156
>AE013599-2921|AAF57537.1| 632|Drosophila melanogaster CG15904-PA
protein.
Length = 632
Score = 28.7 bits (61), Expect = 8.6
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +2
Query: 122 SDANIAQRVDAMAGLLDVLGNGVRNQLVHHLPEFRVSDVACNDFTHFLSDC 274
+ AN+ M LLD++ GV L+H E V + ++DC
Sbjct: 264 TSANVTADYLNMTNLLDLVSQGVYETLIHSFTEITTKFVVSYSYPIGINDC 314
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,542,654
Number of Sequences: 53049
Number of extensions: 740757
Number of successful extensions: 2216
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2214
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3273062859
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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