Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12m07r
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L25599-6|AAA28051.1|  213|Caenorhabditis elegans Hypothetical pr...   208   4e-54
Z95559-20|CAB63360.2|  263|Caenorhabditis elegans Hypothetical p...   151   3e-37
Z71177-2|CAA94867.1|  425|Caenorhabditis elegans Hypothetical pr...    31   0.59 
Z77131-7|CAB00857.2| 1034|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z46381-11|CAA86520.2| 1034|Caenorhabditis elegans Hypothetical p...    31   1.0  
U42835-6|AAA83589.2|  816|Caenorhabditis elegans Dehydrogenases,...    30   1.8  
AF106576-4|AAC78176.1|  473|Caenorhabditis elegans Hypothetical ...    29   2.4  
Z71177-9|CAA94868.2|  425|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z81475-11|CAB03915.1| 1820|Caenorhabditis elegans Hypothetical p...    27   9.6  
Z81127-9|CAB03394.3|  735|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z81056-11|CAB02911.3|  735|Caenorhabditis elegans Hypothetical p...    27   9.6  
AL032627-23|CAA21551.1| 1820|Caenorhabditis elegans Hypothetical...    27   9.6  
AL021497-8|CAA16409.1|  334|Caenorhabditis elegans Hypothetical ...    27   9.6  
AF038613-2|AAB92049.1|  477|Caenorhabditis elegans Cytochrome p4...    27   9.6  

>L25599-6|AAA28051.1|  213|Caenorhabditis elegans Hypothetical
           protein F54H12.6 protein.
          Length = 213

 Score =  208 bits (507), Expect = 4e-54
 Identities = 116/224 (51%), Positives = 143/224 (63%), Gaps = 4/224 (1%)
 Frame = -3

Query: 674 VGDVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAP-AANLPHVLRWYNQIAS 498
           V DVK+  GL   N  LAE+++ +G+  S  D Q+F  +G AP A+  P+V RWY  +AS
Sbjct: 2   VADVKSPAGLAAFNTTLAEQAFATGFVLSGEDAQLFAALGSAPNASTYPNVARWYANVAS 61

Query: 497 YTPAERKTWSQ--GTSPLXXXXXXXXXXXXXXXXXXXDVDLFGSGXXXXXXXXXXXXXXR 324
           YT AERKTW+   G++P                      DLFGS               R
Sbjct: 62  YTDAERKTWASAGGSAPAAAAADGDDF------------DLFGSDDEEEDAEKAKIVEER 109

Query: 323 LKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGY 144
           L AYA+KK+KK   IAKSS++LDVKPWDDETD+ EME  VR+IEM+GL+WG +KL+P+GY
Sbjct: 110 LAAYAEKKAKKAGPIAKSSVILDVKPWDDETDLGEMEKLVRSIEMDGLVWGGAKLIPIGY 169

Query: 143 GINKLQIMCVIEDDKVSVDLLTEKIQ-EFEDFVQSVDIAAFNKI 15
           GI KLQI+ VIED KVSVD L EKI  +FED VQSVDI AFNKI
Sbjct: 170 GIKKLQIITVIEDLKVSVDDLIEKITGDFEDHVQSVDIVAFNKI 213


>Z95559-20|CAB63360.2|  263|Caenorhabditis elegans Hypothetical
           protein Y41E3.10a protein.
          Length = 263

 Score =  151 bits (367), Expect = 3e-37
 Identities = 79/125 (63%), Positives = 91/125 (72%), Gaps = 1/125 (0%)
 Frame = -3

Query: 386 DLFGSGXXXXXXXXXXXXXXRLKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQ 207
           DLFGS               RL AYA KK+ K   IAKSS++LDVKPWDDETD+ EME  
Sbjct: 139 DLFGSEDEEEDEEKKKVVEERLAAYAAKKATKAGPIAKSSVILDVKPWDDETDLGEMEKL 198

Query: 206 VRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSVDLLTEKIQ-EFEDFVQSVDIA 30
           VR+IEM+GL+WG +KL+P+GYGI KLQI+ VIED KVSVD L EKI  +FED VQSVDI 
Sbjct: 199 VRSIEMDGLVWGGAKLIPIGYGIKKLQIITVIEDLKVSVDDLIEKITGDFEDHVQSVDIV 258

Query: 29  AFNKI 15
           AFNKI
Sbjct: 259 AFNKI 263


>Z71177-2|CAA94867.1|  425|Caenorhabditis elegans Hypothetical
           protein AC3.3 protein.
          Length = 425

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 485 QPECMKQFDYTIVVRGEG*RPAPCQLAQILEHQLEKECIQTRSFSQ 622
           QP CM   + + VV+     PAP Q     + Q +++C+QT+   Q
Sbjct: 130 QPSCMPACEQSCVVQ----TPAPVQCVPQCQQQCQQQCVQTQPIQQ 171


>Z77131-7|CAB00857.2| 1034|Caenorhabditis elegans Hypothetical protein
            M01F1.7 protein.
          Length = 1034

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = -3

Query: 668  DVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASYTP 489
            D +   G  D+ +Y  E+ Y+  Y  ++ D+Q           N PH L ++N   S  P
Sbjct: 866  DPRVRPGAVDVVRYWQEQGYLIIYLTARPDMQQRVVSAWLAQHNFPHALLFFNNSFSTEP 925

Query: 488  AERKT 474
             ++K+
Sbjct: 926  LKQKS 930


>Z46381-11|CAA86520.2| 1034|Caenorhabditis elegans Hypothetical
            protein M01F1.7 protein.
          Length = 1034

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = -3

Query: 668  DVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASYTP 489
            D +   G  D+ +Y  E+ Y+  Y  ++ D+Q           N PH L ++N   S  P
Sbjct: 866  DPRVRPGAVDVVRYWQEQGYLIIYLTARPDMQQRVVSAWLAQHNFPHALLFFNNSFSTEP 925

Query: 488  AERKT 474
             ++K+
Sbjct: 926  LKQKS 930


>U42835-6|AAA83589.2|  816|Caenorhabditis elegans Dehydrogenases,
           short chain protein27 protein.
          Length = 816

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 22/66 (33%), Positives = 32/66 (48%)
 Frame = -3

Query: 269 SILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSV 90
           SI+L VKP DDE  ++++ NQ     M G LW A++     Y   ++     I    V V
Sbjct: 436 SIMLCVKPADDEI-VQKIRNQ-----MSGALWSAAQFAVTSYVCVRVLKFLYIMCKSVLV 489

Query: 89  DLLTEK 72
             +T K
Sbjct: 490 HFITPK 495


>AF106576-4|AAC78176.1|  473|Caenorhabditis elegans Hypothetical
           protein W07E6.2 protein.
          Length = 473

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
 Frame = -3

Query: 194 EMEGLLWGASKLVPVGYGINKLQIMC----VIEDDKVSVDLLTEKIQEFEDFVQ 45
           E E  L G+  LVPV    N+LQI+C       DD V +   T +  E  D ++
Sbjct: 14  EDENELGGSGILVPVDISTNELQILCNQLLGSSDDPVPISFFTTEGAEIVDSIR 67


>Z71177-9|CAA94868.2|  425|Caenorhabditis elegans Hypothetical
           protein AC3.4 protein.
          Length = 425

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 485 QPECMKQFDYTIVVRGEG*RPAPCQLAQILEHQLEKECIQTRSFSQ 622
           QP CM   + + VV+     PA  Q     + Q +++C+QT+   Q
Sbjct: 130 QPSCMPACEQSCVVQ----TPAAVQCVPQCQQQCQQQCVQTQPIQQ 171


>Z81475-11|CAB03915.1| 1820|Caenorhabditis elegans Hypothetical
            protein C24H11.7 protein.
          Length = 1820

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 530  HVLRWYNQIASYTPAERKTWSQGTSP 453
            H+L   +Q+ S TPA    W+QG SP
Sbjct: 1524 HLLDLCSQLHSQTPAIFAKWAQGASP 1549


>Z81127-9|CAB03394.3|  735|Caenorhabditis elegans Hypothetical
           protein F09F3.9 protein.
          Length = 735

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 168 LQTCACWVWHK*TANYVCH 112
           LQ CA W+WHK   NY+ +
Sbjct: 187 LQRCA-WLWHKLNENYITY 204


>Z81056-11|CAB02911.3|  735|Caenorhabditis elegans Hypothetical
           protein F09F3.9 protein.
          Length = 735

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 168 LQTCACWVWHK*TANYVCH 112
           LQ CA W+WHK   NY+ +
Sbjct: 187 LQRCA-WLWHKLNENYITY 204


>AL032627-23|CAA21551.1| 1820|Caenorhabditis elegans Hypothetical
            protein C24H11.7 protein.
          Length = 1820

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 530  HVLRWYNQIASYTPAERKTWSQGTSP 453
            H+L   +Q+ S TPA    W+QG SP
Sbjct: 1524 HLLDLCSQLHSQTPAIFAKWAQGASP 1549


>AL021497-8|CAA16409.1|  334|Caenorhabditis elegans Hypothetical
           protein Y51A2D.12 protein.
          Length = 334

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +3

Query: 24  KCSNVNRLYKIFKFLNFFCQQINRNFVVLDDTHNL 128
           KC+  NRL + FK   FF +  N N VV+    NL
Sbjct: 294 KCAESNRLLEKFKNHRFFAES-NSNIVVMSLPKNL 327


>AF038613-2|AAB92049.1|  477|Caenorhabditis elegans Cytochrome p450
           family protein 25A5 protein.
          Length = 477

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 650 GLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPA 543
           G+N LNQ L + +Y +G+  +++ V      GK  A
Sbjct: 93  GMNQLNQSLLQNTYATGWKHTRSAVAPIFSTGKMKA 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,655,670
Number of Sequences: 27780
Number of extensions: 301202
Number of successful extensions: 901
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)