Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12m07f
(553 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun... 100 1e-22
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr... 27 1.8
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 27 2.4
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera... 25 5.6
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 25 5.6
SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz... 25 7.4
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 25 7.4
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 7.4
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 25 9.8
>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 214
Score = 100 bits (240), Expect = 1e-22
Identities = 62/163 (38%), Positives = 78/163 (47%), Gaps = 1/163 (0%)
Frame = +2
Query: 68 MAVGDVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAP-AANLPHVLRWYNQI 244
M D+ + GL LN +L +KS++ GY PSQAD VF+ VG AP A P+ RWY QI
Sbjct: 1 MGFSDLTSDAGLKQLNDFLLDKSFIEGYEPSQADAVVFKAVGVAPDTAKYPNGARWYKQI 60
Query: 245 ASYTPAERKTWSQGTSPLXXXXXXXXXXXXXXXXXXXXVDLFGSGXXXXXXXXXXXXXXX 424
A+Y A T P +DLFGS
Sbjct: 61 ATYDLA--------TLPGTAKEVSAYGPEGAAAAEEDEIDLFGSDEEEDPEAERIKAERV 112
Query: 425 LKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTI 553
+ Y KK+ KP + KS + LDVKPWDDET M E+E VR+I
Sbjct: 113 AE-YNKKKAAKPKAVHKSLVTLDVKPWDDETPMDELEKAVRSI 154
>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
2|||Manual
Length = 667
Score = 27.1 bits (57), Expect = 1.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 289 GALRPSFAFSRSV*SNLIIPS*YVGKVSGRRLANLLK 179
G L S F ++ + +I+PS +G GR + LLK
Sbjct: 394 GLLLTSATFGAAIPTGIIVPSLAIGACIGRAVGTLLK 430
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 26.6 bits (56), Expect = 2.4
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +2
Query: 101 LNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASYTP 259
L+ + YL++ Y T Q + Q+F PA L W N + +Y P
Sbjct: 4648 LDIMINYLSKMYYDDSLTIVQQNSQLFLSTVLDPAVGLSRKKFWNNYLTNYKP 4700
>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
isomerase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 25.4 bits (53), Expect = 5.6
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +2
Query: 44 KVATLKETMAVGDVKTAQGLNDLNQYLAEKSYV 142
K TLK + V DVKT G + N E Y+
Sbjct: 251 KTRTLKGGVVVTDVKTGSGASATNGKKVEMRYI 283
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +3
Query: 300 PPVLNPRLPPQQRKTTMTT 356
PPVL P LPP Q T T+
Sbjct: 449 PPVLLPTLPPIQTTTIQTS 467
>SPBC646.14c |orc5||origin recognition complex subunit
Orc5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 455
Score = 25.0 bits (52), Expect = 7.4
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +2
Query: 101 LNDLNQYLAEKSYVSGYTPSQADVQVF 181
L+ +++YL ++++ Y PS+ D Q F
Sbjct: 300 LSLVSKYLLVSAFLASYNPSRLDAQFF 326
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 440 DKKSKKPALIAKSSILLDVKPWDDETDMKEME 535
DK+S P LIA++ + ++ D+ +KE E
Sbjct: 692 DKESNSPVLIAETRLFNNLFKCDNPAALKEQE 723
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 239 DYTIVVRGEG*RPAPCQLAQILEHQLE 159
+Y +VV G G P C + L QLE
Sbjct: 308 NYPVVVNGNGVNPYLCDVQAFLTSQLE 334
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 318 RLPPQQRKTTMTTTLIYLVLVTRKRMQKLNEFE 416
RLPP+Q K +L ++ + R Q+LN+ +
Sbjct: 384 RLPPEQLKLIGMLYRKHLQIILQHRQQQLNKIQ 416
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,011,754
Number of Sequences: 5004
Number of extensions: 35687
Number of successful extensions: 99
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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