Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12m07f
(553 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631... 84 6e-17
07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890... 83 1e-16
07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615... 73 1e-13
01_06_1167 - 35062766-35062870,35063165-35063228,35063647-350637... 36 0.016
01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443 30 1.1
02_04_0317 + 21996324-21996681,21996833-21996859,21997299-219982... 29 2.5
09_06_0229 + 21709510-21709532,21710021-21710041,21712386-21713577 28 4.3
05_05_0253 - 23632907-23633646,23633758-23635050,23636471-23636663 27 10.0
04_04_0072 + 22524974-22525310,22526334-22526552,22526826-225275... 27 10.0
>03_04_0016 +
16461542-16461566,16462701-16462732,16463015-16463100,
16463189-16463305,16463399-16463474,16463695-16463818,
16464482-16464595,16464700-16464947
Length = 273
Score = 84.2 bits (199), Expect = 6e-17
Identities = 56/167 (33%), Positives = 79/167 (47%), Gaps = 5/167 (2%)
Frame = +2
Query: 68 MAVGDVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQI- 244
+ + +V + GL L++YL +SY+SGY S+ D+ VF + APAA+ +V RWY+ I
Sbjct: 22 ITLSNVNSEAGLQKLDEYLLTRSYISGYQASKDDMTVFTSLPSAPAASYVNVTRWYDHIS 81
Query: 245 ----ASYTPAERKTWSQGTSPLXXXXXXXXXXXXXXXXXXXXVDLFGSGXXXXXXXXXXX 412
+S AE + ++ VDLFG
Sbjct: 82 ALLRSSGVTAEGEGVKVESTACSVSPTADQKAPAADEEDDDDVDLFGEETEEEKKAAEE- 140
Query: 413 XXXXLKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTI 553
+A A K S K KSS+LLDVKPWDDETDM ++E VR +
Sbjct: 141 -----RAAAVKASGKKKESGKSSVLLDVKPWDDETDMAKLEEAVRNV 182
>07_03_1580 +
27888275-27888360,27888755-27888871,27888964-27889045,
27889710-27889821,27889958-27890071,27890163-27890326
Length = 224
Score = 83.0 bits (196), Expect = 1e-16
Identities = 55/162 (33%), Positives = 74/162 (45%), Gaps = 4/162 (2%)
Frame = +2
Query: 80 DVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQI----A 247
D+ TA GL L Q+L+ K+YVSG S+ D++VF V P A P+ RWY+ + A
Sbjct: 7 DLHTADGLKALEQHLSGKTYVSGNAISKDDIKVFAAVPSKPGAEFPNAARWYDTVAAALA 66
Query: 248 SYTPAERKTWSQGTSPLXXXXXXXXXXXXXXXXXXXXVDLFGSGXXXXXXXXXXXXXXXL 427
S P + + +DLFG
Sbjct: 67 SRFPGKAVGVNLPGGGAASSAAAAAPAAKDADEDDDDLDLFGDETEEDKKAAD------- 119
Query: 428 KAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTI 553
+ A K S K KSS+LLDVKPWDDETDMK++E VR++
Sbjct: 120 ERAASKASSKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSV 161
>07_03_1260 -
25260872-25261101,25261199-25261312,25261473-25261596,
25261755-25261839,25261917-25262033,25262122-25262207
Length = 251
Score = 73.3 bits (172), Expect = 1e-13
Identities = 53/166 (31%), Positives = 72/166 (43%), Gaps = 8/166 (4%)
Frame = +2
Query: 80 DVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQI----- 244
+V + GL L++YL +SY+SGY S D+ V+ AP+++ +V RW+ I
Sbjct: 7 NVSSEAGLKKLDEYLLTRSYISGYQASNDDLAVYSAFSTAPSSSYTNVARWFTHIDALLR 66
Query: 245 ASYTPAER---KTWSQGTSPLXXXXXXXXXXXXXXXXXXXXVDLFGSGXXXXXXXXXXXX 415
S A+ K S VDLFG
Sbjct: 67 LSGVTADGQGVKVESTAVPSASTPDVADAKAPAADDDDDDDVDLFGEETEEEKKAAEE-- 124
Query: 416 XXXLKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTI 553
+A A K S K KSS+LLDVKPWDDETDM ++E VR +
Sbjct: 125 ----RAAAVKASGKKKESGKSSVLLDVKPWDDETDMTKLEEAVRNV 166
>01_06_1167 -
35062766-35062870,35063165-35063228,35063647-35063738,
35064137-35064205,35064322-35064412,35064509-35064732,
35065064-35065180,35065583-35065651,35066172-35066237,
35066335-35066505,35066581-35066661,35067620-35067700
Length = 409
Score = 36.3 bits (80), Expect = 0.016
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 9/57 (15%)
Frame = +2
Query: 101 LNDLNQYLAEKSYV--SGYTPSQADVQVFEQV-------GKAPAANLPHVLRWYNQI 244
L +LNQ L++KS + +G+ PS AD+ VF + G+ PHVLRW + I
Sbjct: 76 LGNLNQDLSQKSVLLGNGFKPSVADIVVFATIQVFVSHLGENELQKYPHVLRWMDYI 132
>01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443
Length = 221
Score = 30.3 bits (65), Expect = 1.1
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Frame = +2
Query: 92 AQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQV---GKAPAANL----PHVLRWYNQIAS 250
AQ L+ + +LA Y++G S AD + K P A L PHV W++ I+S
Sbjct: 145 AQVLDVYDAHLAGSRYLAGNRFSLADANHMSYLLFLSKTPMAELVASRPHVKAWWDDISS 204
Query: 251 YTPAERKT 274
PA +KT
Sbjct: 205 -RPAWKKT 211
>02_04_0317 +
21996324-21996681,21996833-21996859,21997299-21998227,
21998317-21999162
Length = 719
Score = 29.1 bits (62), Expect = 2.5
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Frame = -1
Query: 223 YVGKVSGRRLANLLKYLNISLR-----RSVSRHVAFLS*ILVQVIETLGGFNVSYSHSF 62
Y G+VS L+ LK+L+ SLR R V+R A L++++ ++G ++ ++H +
Sbjct: 61 YPGRVSRWWLSQSLKHLDASLRRLGASRLVTRRSADAVVALIELVRSIGATHLFFNHLY 119
>09_06_0229 + 21709510-21709532,21710021-21710041,21712386-21713577
Length = 411
Score = 28.3 bits (60), Expect = 4.3
Identities = 21/64 (32%), Positives = 27/64 (42%)
Frame = +2
Query: 41 KKVATLKETMAVGDVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPH 220
K L+E +A + K A G+ A S TP ADV + PAA+LP
Sbjct: 19 KHATVLREMVAAAEAKAAIGVATPTPTAAPCG--STTTPRDADVDDKMTIVGHPAASLPL 76
Query: 221 VLRW 232
RW
Sbjct: 77 ETRW 80
>05_05_0253 - 23632907-23633646,23633758-23635050,23636471-23636663
Length = 741
Score = 27.1 bits (57), Expect = 10.0
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +2
Query: 143 SGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASYTPAERKTWSQGTSPL 298
SG TP D ++ P LPHV+ +++ +TP ++ S G S L
Sbjct: 510 SGITPPLPD-----EIALPPRGRLPHVIVHLDEMEDWTPGPPRSPSFGVSGL 556
>04_04_0072 +
22524974-22525310,22526334-22526552,22526826-22527532,
22527664-22528482
Length = 693
Score = 27.1 bits (57), Expect = 10.0
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Frame = -1
Query: 223 YVGKVSGRRLANLLKYLNISLRR-----SVSRHVAFLS*ILVQVIETLGGFNVSYSHSF 62
Y G+VS L+ LK+L+ SLRR V+R A L+Q++ G + ++H +
Sbjct: 54 YPGRVSRWWLSQSLKHLDASLRRLGAGKLVTRRSADAVVALLQLVRDTGATRLFFNHLY 112
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,529,287
Number of Sequences: 37544
Number of extensions: 247990
Number of successful extensions: 697
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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