Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12m07f
         (553 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.)             140   9e-34
SB_52162| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   4e-08
SB_25408| Best HMM Match : ABC_tran (HMM E-Value=0)                    29   3.3  
SB_56071| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_30461| Best HMM Match : zf-C2H2 (HMM E-Value=0.064)                 27   7.7  
SB_22051| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_11701| Best HMM Match : Dpy-30 (HMM E-Value=0.29)                   27   7.7  

>SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score =  140 bits (338), Expect = 9e-34
 Identities = 76/168 (45%), Positives = 94/168 (55%), Gaps = 6/168 (3%)
 Frame = +2

Query: 68  MAVGDVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIA 247
           M  GD+K+  GL+ LN +L E+SY+ GY PSQAD  VFE +  AP A+LPH LRWYN I 
Sbjct: 1   MGFGDLKSQAGLSALNTFLTERSYIEGYVPSQADAVVFEALKSAPPASLPHALRWYNHIV 60

Query: 248 SY------TPAERKTWSQGTSPLXXXXXXXXXXXXXXXXXXXXVDLFGSGXXXXXXXXXX 409
           SY       P E+K+  +   P                     +DLFGS           
Sbjct: 61  SYGEGKQNFPGEKKS-VESFGP--AGAASEQKPAPADDNDDDEIDLFGSDDEEEEKEAAR 117

Query: 410 XXXXXLKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTI 553
                LKAY +KK+KK  +IAKS+I+LDVKPWDDETDM EME  VR+I
Sbjct: 118 IRQERLKAYEEKKAKKKPVIAKSNIMLDVKPWDDETDMAEMEKLVRSI 165


>SB_52162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 54.8 bits (126), Expect = 4e-08
 Identities = 23/35 (65%), Positives = 25/35 (71%)
 Frame = +2

Query: 149 YTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASY 253
           Y PSQAD  VFE +  AP A+LPH LRWYN I SY
Sbjct: 2   YVPSQADAVVFEALKSAPPASLPHALRWYNHIVSY 36


>SB_25408| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1636

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +2

Query: 101 LNDLNQYLAEKSYVSGYTPSQADVQ-VFEQVGK 196
           +N L + L EKS+  GY+P+ +DVQ V + V K
Sbjct: 62  VNKLPKGLIEKSWNFGYSPNTSDVQTVMQNVAK 94


>SB_56071| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 856

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -3

Query: 287 CPETKFCVQPECMKQFDYTIVVRGEG*RPAPCQLAQILEHQLEKECIQ 144
           CP       PE    F  T+ +  EG     CQ+  IL H+++ EC++
Sbjct: 568 CPPFGISSAPEV---FQRTMSMTLEGLEGVVCQMDDILIHEVQDECVR 612


>SB_30461| Best HMM Match : zf-C2H2 (HMM E-Value=0.064)
          Length = 197

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 425 LKAYADKKSKKPALIAKSSILLDVKPWDDETDMKE 529
           LK  AD   KKP  +    ++ D  P D+E + KE
Sbjct: 76  LKPAADVTPKKPKKVKHKPVIADPVPVDEEEEPKE 110


>SB_22051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 821

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 491 DVKPWDDETDMKEMEN 538
           DV+PWD  TD+ E EN
Sbjct: 653 DVRPWDPLTDLVEYEN 668


>SB_11701| Best HMM Match : Dpy-30 (HMM E-Value=0.29)
          Length = 355

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -3

Query: 302 RSMGWCPETKFCVQPECMKQFDYTIVVRGEG*RPAPCQLAQILEHQLEK 156
           R++ W PE +  +Q +  ++  +T  +RG G    P  L     H  EK
Sbjct: 213 RALPWIPEKQLKMQRDTWRENKFTSCLRGFGGSEEPPHLTGASAHLREK 261


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,081,680
Number of Sequences: 59808
Number of extensions: 268285
Number of successful extensions: 587
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)