Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12m06r
(429 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein L23|Schizosac... 208 2e-55
SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein L23|Schizosacc... 208 2e-55
SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit L38|... 47 1e-06
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 30 0.18
SPAC1002.17c |urg2||uracil phosphoribosyltransferase |Schizosacc... 26 2.2
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate... 26 2.2
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 26 2.9
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 26 2.9
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 25 3.8
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 25 5.0
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 25 5.0
SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 5.0
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c... 25 6.6
SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet... 25 6.6
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 25 6.6
SPAC3A12.08 |||conserved fungal protein|Schizosaccharomyces pomb... 24 8.7
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo... 24 8.7
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar... 24 8.7
>SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein
L23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 208 bits (509), Expect = 2e-55
Identities = 92/124 (74%), Positives = 113/124 (91%)
Frame = -1
Query: 387 RGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVA 208
RGRG ++G K+R++LGLPV A++NCADN+GAKNLY+++V G RLNRLPAA GDM++A
Sbjct: 3 RGRGAASGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLA 62
Query: 207 TVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAK 28
TVKKGKP+LRKK+MPA+V+RQRK +RR+DGV++YFEDNAGVIVN KGEMKGSAITGPVAK
Sbjct: 63 TVKKGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 122
Query: 27 ECAD 16
ECAD
Sbjct: 123 ECAD 126
>SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein
L23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 139
Score = 208 bits (509), Expect = 2e-55
Identities = 92/124 (74%), Positives = 113/124 (91%)
Frame = -1
Query: 387 RGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVA 208
RGRG ++G K+R++LGLPV A++NCADN+GAKNLY+++V G RLNRLPAA GDM++A
Sbjct: 3 RGRGAASGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLA 62
Query: 207 TVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAK 28
TVKKGKP+LRKK+MPA+V+RQRK +RR+DGV++YFEDNAGVIVN KGEMKGSAITGPVAK
Sbjct: 63 TVKKGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 122
Query: 27 ECAD 16
ECAD
Sbjct: 123 ECAD 126
>SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit
L38|Schizosaccharomyces pombe|chr 2|||Manual
Length = 126
Score = 46.8 bits (106), Expect = 1e-06
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Frame = -1
Query: 234 AGSGDMIVATVKKGKPEL---------RKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVI 82
A GD +V VKK + R + A+++R + P RR DG ++ F+DNA V+
Sbjct: 31 ASLGDEVVVVVKKARSGSSVTAANKVKRGDIHHAIIVRTKSPVRRPDGRYVRFDDNACVL 90
Query: 81 VNNKGEMKGSAITGPVAKE 25
VN + E G+ I VA E
Sbjct: 91 VNKECEPLGTRILSVVANE 109
>SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 886
Score = 29.9 bits (64), Expect = 0.18
Identities = 23/87 (26%), Positives = 37/87 (42%)
Frame = +2
Query: 83 MTPALSSKYINTPSRLLNGFRCLMTTAGITFFRSSGLPFLTVATIMSPEPAAGSLFRRPL 262
+ ALSS+Y S L +T +T SS T +++ +P P + R P
Sbjct: 777 LAKALSSEYTFQKSVLAGLSAATRSTKDLTILLSSSARHYTESSLATPVPLMSPIARVPA 836
Query: 263 IPWTAITYRFFAPVLSAQLITAPTGRP 343
P +A A +++ LI +P P
Sbjct: 837 TPLSA-ALGSAAQSITSPLIMSPAAIP 862
>SPAC1002.17c |urg2||uracil phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 189
Score = 26.2 bits (55), Expect = 2.2
Identities = 16/70 (22%), Positives = 28/70 (40%)
Frame = -1
Query: 405 YNKMSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGS 226
YNK+ K+ + ++ G AVI G KN+ ++V + L R
Sbjct: 96 YNKLPKKSTDTAVILDPVMATGGTANAVITTLQEWGCKNIIFVSVLASEQALTRFSNIPG 155
Query: 225 GDMIVATVKK 196
+ ++ V K
Sbjct: 156 VEFVIGAVDK 165
>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
transferase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 453
Score = 26.2 bits (55), Expect = 2.2
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = -1
Query: 201 KKGKPELRKKVMPAVVIRQRK---PFRRRDGVFIYFEDNA 91
KKG P RK P+++ PF RD +FI E NA
Sbjct: 337 KKGAPVFRKH-FPSILQELNSLDPPFYERDAIFIVDEGNA 375
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 25.8 bits (54), Expect = 2.9
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = +2
Query: 53 EPFISPLLLTMTPALSSKYINTPS 124
+P+ P+L + P L Y++ PS
Sbjct: 275 QPYSGPILASTAPTLDGSYLSNPS 298
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 25.8 bits (54), Expect = 2.9
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +2
Query: 2 YAATESAHSLATGPVMAEPFISPLLLTMTPALSSKYINTPSRLLNGFRCLMTTA 163
Y AT H GP++ ++ L P +S Y+N + L+GF+ ++ A
Sbjct: 963 YNATHFEH---IGPMLEATWMPILAALSNPLQNSDYVNELNMCLDGFQLVVRIA 1013
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 25.4 bits (53), Expect = 3.8
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -1
Query: 216 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGV 85
IV KGK L + P++ I R G +Y ED GV
Sbjct: 309 IVVLSSKGKVSLESPMSPSLPIEGTFRSFRVHGATLYLEDTDGV 352
>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 681
Score = 25.0 bits (52), Expect = 5.0
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 260 LIPWTAITYRFFAPVLSAQLITAPTGRPREIRNFAPAEPPR 382
L+P A Y P +A T+PT P I++ PAEPP+
Sbjct: 175 LLPPNAPYYHEIEPPRTASN-TSPT--PNSIKSAHPAEPPK 212
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 25.0 bits (52), Expect = 5.0
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +1
Query: 94 IVLKVYKYSITPSERFPLPDDHCRHYLFPEFR 189
+V +++++ E FPLP LFP R
Sbjct: 438 LVSEIFRHPTHTDEDFPLPSPSLSSLLFPTLR 469
>SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 120
Score = 25.0 bits (52), Expect = 5.0
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 295 CPCVVGAVDYCSHWETQGDTEFR 363
CPC + + SHW+ + D FR
Sbjct: 14 CPCFLSCCAFMSHWKLK-DFSFR 35
>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 24.6 bits (51), Expect = 6.6
Identities = 16/56 (28%), Positives = 22/56 (39%)
Frame = +1
Query: 82 YDTRIVLKVYKYSITPSERFPLPDDHCRHYLFPEFRFTLFDCGHNHVPGTGRRQSV 249
Y+TR + K + +E PLP LF E F C + G QS+
Sbjct: 11 YNTRNMEKESSKDLVQNEDTPLPVQKISMSLFHEIVFVFIACTAQLMTQAGLGQSI 66
>SPAC29A4.20 |||RNA polymerase II elongator complex, histone
acetyltransferase subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 544
Score = 24.6 bits (51), Expect = 6.6
Identities = 13/46 (28%), Positives = 18/46 (39%)
Frame = -3
Query: 367 GSEIPYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSPEQTAGGR 230
G+ Y PG P + + G E R R + P + A GR
Sbjct: 103 GNVCVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYDPYEQARGR 148
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 24.6 bits (51), Expect = 6.6
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -3
Query: 367 GSEIPYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSPEQTAGGRFRGH 218
G +P+ P PSGSS R + G+ RY+ + G GH
Sbjct: 421 GDGVPFSPSMPSGSS---RGGYHGRNPGGPNRQRYRGRRDGRGGNTGGGH 467
>SPAC3A12.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 214
Score = 24.2 bits (50), Expect = 8.7
Identities = 10/40 (25%), Positives = 20/40 (50%)
Frame = -1
Query: 165 PAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAI 46
P+ I +KP D V + +D+ + N+K ++ A+
Sbjct: 171 PSYSINYKKPVPAGDWVIVRVKDDVARLYNSKSQLLAEAL 210
>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 610
Score = 24.2 bits (50), Expect = 8.7
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -1
Query: 123 DGVFIYFEDNAGVIVNNKGEMKGSAI 46
DG + E N ++VN +M+G+A+
Sbjct: 216 DGALLLNERNVEILVNKLTQMRGAAL 241
>SPAC17G8.13c |mst2||histone acetyltransferase
Mst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 407
Score = 24.2 bits (50), Expect = 8.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 278 ITYRFFAPVLSAQLITAPTGRPREIR 355
+ Y F P+LS QL T P +P IR
Sbjct: 80 VAYSFSDPILSTQLRTPPP-QPTSIR 104
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,925,116
Number of Sequences: 5004
Number of extensions: 40266
Number of successful extensions: 120
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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