Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12m06r
(429 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE013599-3487|AAF46914.1| 140|Drosophila melanogaster CG3661-PA... 252 1e-67
M85295-1|AAA28867.1| 140|Drosophila melanogaster ribosomal prot... 237 3e-63
U43733-1|AAA86639.1| 904|Drosophila melanogaster Abrupt protein. 29 2.0
BT003807-1|AAO41490.1| 369|Drosophila melanogaster AT11330p pro... 29 2.0
BT001583-1|AAN71338.1| 894|Drosophila melanogaster RE25924p pro... 29 2.0
AE014134-2051|AAN10774.1| 894|Drosophila melanogaster CG4807-PB... 29 2.0
AE014134-2050|AAF53087.2| 904|Drosophila melanogaster CG4807-PA... 29 2.0
Z11527-1|CAA77616.1| 614|Drosophila melanogaster CYS3HIS finger... 29 2.6
BT021256-1|AAX33404.1| 608|Drosophila melanogaster RE58038p pro... 29 2.6
AE014297-3282|AAO41594.1| 599|Drosophila melanogaster CG4620-PB... 29 2.6
AE014297-3281|AAO41593.1| 599|Drosophila melanogaster CG4620-PA... 29 2.6
BT023778-1|AAZ41787.1| 2016|Drosophila melanogaster LD21067p pro... 28 6.1
AY128444-1|AAM75037.1| 1332|Drosophila melanogaster LD21041p pro... 28 6.1
AE014134-1407|AAF52607.1| 2016|Drosophila melanogaster CG8552-PA... 28 6.1
AE014134-438|AAO41161.1| 1283|Drosophila melanogaster CG33125-PA... 28 6.1
AY113597-1|AAM29602.1| 126|Drosophila melanogaster RH47776p pro... 27 8.1
>AE013599-3487|AAF46914.1| 140|Drosophila melanogaster CG3661-PA
protein.
Length = 140
Score = 252 bits (617), Expect = 1e-67
Identities = 120/127 (94%), Positives = 123/127 (96%)
Frame = -1
Query: 396 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDM 217
MSKRGRGG+AG KFRISLGLPVGAV+NCADNTGAKNLYVIAV GI+GRLNRLPAAG GDM
Sbjct: 1 MSKRGRGGTAGGKFRISLGLPVGAVMNCADNTGAKNLYVIAVHGIRGRLNRLPAAGVGDM 60
Query: 216 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGP 37
VATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGP
Sbjct: 61 FVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGP 120
Query: 36 VAKECAD 16
VAKECAD
Sbjct: 121 VAKECAD 127
>M85295-1|AAA28867.1| 140|Drosophila melanogaster ribosomal protein
L17A protein.
Length = 140
Score = 237 bits (581), Expect = 3e-63
Identities = 114/127 (89%), Positives = 117/127 (92%)
Frame = -1
Query: 396 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDM 217
MSKRGRGG+AG KFRISLGLPVGAV+NCADNTGAKNLYVIAV GI+GRLNRLPAAG GDM
Sbjct: 1 MSKRGRGGTAGGKFRISLGLPVGAVMNCADNTGAKNLYVIAVHGIRGRLNRLPAAGVGDM 60
Query: 216 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGP 37
VATVKKGKPELRKKV RQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGP
Sbjct: 61 FVATVKKGKPELRKKVSVVPSARQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGP 120
Query: 36 VAKECAD 16
VAKECAD
Sbjct: 121 VAKECAD 127
>U43733-1|AAA86639.1| 904|Drosophila melanogaster Abrupt protein.
Length = 904
Score = 29.5 bits (63), Expect = 2.0
Identities = 25/59 (42%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +2
Query: 92 ALSSKYINTPSRLLNG-FRCLMTTAGITFFRSSGLPFLTVATIMSPEPAAGSLF-RRPL 262
A+ N P LL G F AG F SG P LT+ IM E AAG+L RPL
Sbjct: 785 AMGHSLDNLPPGLLPGQFDLSKLAAGNPAFGQSG-PGLTIEPIMRHEQAAGNLSPNRPL 842
>BT003807-1|AAO41490.1| 369|Drosophila melanogaster AT11330p
protein.
Length = 369
Score = 29.5 bits (63), Expect = 2.0
Identities = 25/59 (42%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +2
Query: 92 ALSSKYINTPSRLLNG-FRCLMTTAGITFFRSSGLPFLTVATIMSPEPAAGSLF-RRPL 262
A+ N P LL G F AG F SG P LT+ IM E AAG+L RPL
Sbjct: 250 AMGHSLDNLPPGLLPGQFDLSKLAAGNPAFGQSG-PGLTIEPIMRHEQAAGNLSPNRPL 307
>BT001583-1|AAN71338.1| 894|Drosophila melanogaster RE25924p
protein.
Length = 894
Score = 29.5 bits (63), Expect = 2.0
Identities = 25/59 (42%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +2
Query: 92 ALSSKYINTPSRLLNG-FRCLMTTAGITFFRSSGLPFLTVATIMSPEPAAGSLF-RRPL 262
A+ N P LL G F AG F SG P LT+ IM E AAG+L RPL
Sbjct: 775 AMGHSLDNLPPGLLPGQFDLSKLAAGNPAFGQSG-PGLTIEPIMRHEQAAGNLSPNRPL 832
>AE014134-2051|AAN10774.1| 894|Drosophila melanogaster CG4807-PB,
isoform B protein.
Length = 894
Score = 29.5 bits (63), Expect = 2.0
Identities = 25/59 (42%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +2
Query: 92 ALSSKYINTPSRLLNG-FRCLMTTAGITFFRSSGLPFLTVATIMSPEPAAGSLF-RRPL 262
A+ N P LL G F AG F SG P LT+ IM E AAG+L RPL
Sbjct: 775 AMGHSLDNLPPGLLPGQFDLSKLAAGNPAFGQSG-PGLTIEPIMRHEQAAGNLSPNRPL 832
>AE014134-2050|AAF53087.2| 904|Drosophila melanogaster CG4807-PA,
isoform A protein.
Length = 904
Score = 29.5 bits (63), Expect = 2.0
Identities = 25/59 (42%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +2
Query: 92 ALSSKYINTPSRLLNG-FRCLMTTAGITFFRSSGLPFLTVATIMSPEPAAGSLF-RRPL 262
A+ N P LL G F AG F SG P LT+ IM E AAG+L RPL
Sbjct: 785 AMGHSLDNLPPGLLPGQFDLSKLAAGNPAFGQSG-PGLTIEPIMRHEQAAGNLSPNRPL 842
>Z11527-1|CAA77616.1| 614|Drosophila melanogaster CYS3HIS finger
protein protein.
Length = 614
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -1
Query: 150 RQRKPFRRRDGVFIYFEDN 94
R+R+P R+RDG F Y DN
Sbjct: 72 RRRRPVRKRDGTFNYSADN 90
>BT021256-1|AAX33404.1| 608|Drosophila melanogaster RE58038p
protein.
Length = 608
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -1
Query: 150 RQRKPFRRRDGVFIYFEDN 94
R+R+P R+RDG F Y DN
Sbjct: 66 RRRRPVRKRDGTFNYSADN 84
>AE014297-3282|AAO41594.1| 599|Drosophila melanogaster CG4620-PB,
isoform B protein.
Length = 599
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -1
Query: 150 RQRKPFRRRDGVFIYFEDN 94
R+R+P R+RDG F Y DN
Sbjct: 57 RRRRPVRKRDGTFNYSADN 75
>AE014297-3281|AAO41593.1| 599|Drosophila melanogaster CG4620-PA,
isoform A protein.
Length = 599
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -1
Query: 150 RQRKPFRRRDGVFIYFEDN 94
R+R+P R+RDG F Y DN
Sbjct: 57 RRRRPVRKRDGTFNYSADN 75
>BT023778-1|AAZ41787.1| 2016|Drosophila melanogaster LD21067p protein.
Length = 2016
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 212 TIMSPEPAAGSLFRRPLIPWTAITYRFFAPVLSAQLITAPTG 337
TI++P P S IP T + P SA+L+ AP G
Sbjct: 1011 TILTPAPDTTSTLFANNIPTTTPSIPDIVPTTSAELVDAPPG 1052
>AY128444-1|AAM75037.1| 1332|Drosophila melanogaster LD21041p
protein.
Length = 1332
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 212 TIMSPEPAAGSLFRRPLIPWTAITYRFFAPVLSAQLITAPTG 337
TI++P P S IP T + P SA+L+ AP G
Sbjct: 327 TILTPAPDTTSTLFANNIPTTTPSIPDIVPTTSAELVDAPPG 368
>AE014134-1407|AAF52607.1| 2016|Drosophila melanogaster CG8552-PA
protein.
Length = 2016
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 212 TIMSPEPAAGSLFRRPLIPWTAITYRFFAPVLSAQLITAPTG 337
TI++P P S IP T + P SA+L+ AP G
Sbjct: 1011 TILTPAPDTTSTLFANNIPTTTPSIPDIVPTTSAELVDAPPG 1052
>AE014134-438|AAO41161.1| 1283|Drosophila melanogaster CG33125-PA
protein.
Length = 1283
Score = 27.9 bits (59), Expect = 6.1
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = -3
Query: 403 QQNV*ERTWWFRGSEIPYLPGSPSGSSNQLRRQHR--GKESVCDRCPRYQRSPE 248
Q++V +R S+ P +PGS SS LR +HR K S+ + Y PE
Sbjct: 920 QEHVCKRKSIEASSKPPEMPGSIGSSSEYLRPRHRLVTKWSLTSQSKPYNSRPE 973
>AY113597-1|AAM29602.1| 126|Drosophila melanogaster RH47776p
protein.
Length = 126
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = -3
Query: 301 RGKESVCDRCPRYQRSPEQTAGGRF-RGHDCGHSQKG 194
R ES D C RY R+ Q G RF RG C G
Sbjct: 32 RSGESRGDECSRYSRTRCQRTGHRFRRGGRCHRQATG 68
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,535,433
Number of Sequences: 53049
Number of extensions: 520210
Number of successful extensions: 1990
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1990
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1334434944
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -