Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12m06r
(429 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U32305-14|AAK18857.1| 140|Caenorhabditis elegans Ribosomal prot... 233 5e-62
U28942-1|AAA68355.2| 441|Caenorhabditis elegans Hypothetical pr... 32 0.15
AL161712-21|CAC70129.2| 729|Caenorhabditis elegans Hypothetical... 28 2.5
Z82051-6|CAB04821.1| 354|Caenorhabditis elegans Hypothetical pr... 28 3.3
U58753-1|AAC24437.2| 814|Caenorhabditis elegans Hypothetical pr... 28 3.3
Z69787-1|CAA93642.1| 300|Caenorhabditis elegans Hypothetical pr... 27 4.3
Z73972-2|CAA98258.1| 316|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z73972-1|CAA98257.1| 316|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z73427-5|CAA97803.1| 917|Caenorhabditis elegans Hypothetical pr... 27 5.7
X51623-1|CAA35955.1| 316|Caenorhabditis elegans collagen protein. 27 5.7
X51622-1|CAA35954.1| 316|Caenorhabditis elegans collagen protein. 27 5.7
U80440-3|AAK21470.2| 380|Caenorhabditis elegans Hypothetical pr... 27 7.5
AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical... 27 7.5
Z78064-2|CAB01508.2| 317|Caenorhabditis elegans Hypothetical pr... 26 10.0
Z78064-1|CAB01509.1| 313|Caenorhabditis elegans Hypothetical pr... 26 10.0
Z78012-6|CAB01416.1| 480|Caenorhabditis elegans Hypothetical pr... 26 10.0
X74228-1|CAA52299.1| 491|Caenorhabditis elegans pha-1 protein. 26 10.0
X73845-1|CAA52066.1| 491|Caenorhabditis elegans pha1 protein. 26 10.0
AY557405-1|AAS64750.1| 480|Caenorhabditis elegans cyclin L prot... 26 10.0
AL032642-5|CAD91711.1| 453|Caenorhabditis elegans Hypothetical ... 26 10.0
AL032642-4|CAA21655.1| 491|Caenorhabditis elegans Hypothetical ... 26 10.0
AL023835-10|CAA19494.2| 691|Caenorhabditis elegans Hypothetical... 26 10.0
>U32305-14|AAK18857.1| 140|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 23 protein.
Length = 140
Score = 233 bits (569), Expect = 5e-62
Identities = 109/127 (85%), Positives = 119/127 (93%)
Frame = -1
Query: 396 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDM 217
MSKRGRGG++GAKFRISLGLPVGAV+NCADNTGAKNL+VI+V GI+GRLNRLP+AG GDM
Sbjct: 1 MSKRGRGGASGAKFRISLGLPVGAVMNCADNTGAKNLFVISVYGIRGRLNRLPSAGVGDM 60
Query: 216 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGP 37
V +VKKGKPELRKKV+ VVIRQRK FRR+DG FIYFEDNAGVIVNNKGEMKGSAITGP
Sbjct: 61 FVCSVKKGKPELRKKVLQGVVIRQRKQFRRKDGTFIYFEDNAGVIVNNKGEMKGSAITGP 120
Query: 36 VAKECAD 16
VAKECAD
Sbjct: 121 VAKECAD 127
>U28942-1|AAA68355.2| 441|Caenorhabditis elegans Hypothetical
protein F56D3.1 protein.
Length = 441
Score = 32.3 bits (70), Expect = 0.15
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = +2
Query: 191 LPFL-TVATIMSPEPAAGSLFRRPLIPWTAITYRFFAPVLSAQLITAPTGRPREIRNFAP 367
+PF+ T + P A ++ R P+ P+ T AP + PT PR I P
Sbjct: 131 IPFVQTTPATFATLPPAPAVTRAPIQPFVPQTVATIAPSFVRPQV--PTAPPRVIAPQQP 188
Query: 368 AEPPRPLLDILLYQNFEKK 424
+P RP+ I Q F+ +
Sbjct: 189 QQPFRPIQPIQPQQPFQPR 207
>AL161712-21|CAC70129.2| 729|Caenorhabditis elegans Hypothetical
protein Y66D12A.5 protein.
Length = 729
Score = 28.3 bits (60), Expect = 2.5
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Frame = -1
Query: 345 LGLPVGAVINC-ADNTGAKNLYVIAVQG---IKGRLNRLPAAGSGDMIVATVKKGKPELR 178
L L G V C +D KN + + G + G+LNR M+ +T K +L
Sbjct: 453 LNLSPGTVRKCYSDWLNRKNAEIQSGSGEIRVSGQLNRANPDEYLHMLNSTFLKNFEKLS 512
Query: 177 KKVM-PAVVIRQRKPFRRRDGVFIYFEDN 94
V P +RK +RD F Y+ED+
Sbjct: 513 NLVQEPPRRSLKRKRVSQRDANFYYYEDD 541
>Z82051-6|CAB04821.1| 354|Caenorhabditis elegans Hypothetical
protein T23D5.9 protein.
Length = 354
Score = 27.9 bits (59), Expect = 3.3
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 79 DYDTRIVLKVYKYSITPSERFPL 147
DY + V K+Y YSIT RFP+
Sbjct: 162 DYMSEPVQKMYNYSITSLPRFPI 184
>U58753-1|AAC24437.2| 814|Caenorhabditis elegans Hypothetical
protein W03B1.2 protein.
Length = 814
Score = 27.9 bits (59), Expect = 3.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 236 AGSLFRRPLIPWTAITYRFFAPVLSAQLITA 328
A LFR ++P+ TY F +L L+TA
Sbjct: 562 ASCLFRSTIMPFVVFTYIFVTGILLVNLLTA 592
>Z69787-1|CAA93642.1| 300|Caenorhabditis elegans Hypothetical
protein C44C10.1 protein.
Length = 300
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = -3
Query: 346 PGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 251
PG P G+ N G CD CP + +P
Sbjct: 267 PGQPGGNGNNGADGETGAPGGCDHCPPPRTAP 298
>Z73972-2|CAA98258.1| 316|Caenorhabditis elegans Hypothetical
protein F15H10.2 protein.
Length = 316
Score = 27.1 bits (57), Expect = 5.7
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = -3
Query: 355 PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 251
P PG+P + + G E CD CP + +P
Sbjct: 280 PGAPGAPGQAGAPGQDGESGSEGACDHCPPPRTAP 314
>Z73972-1|CAA98257.1| 316|Caenorhabditis elegans Hypothetical
protein F15H10.1 protein.
Length = 316
Score = 27.1 bits (57), Expect = 5.7
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = -3
Query: 355 PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 251
P PG+P + + G E CD CP + +P
Sbjct: 280 PGAPGAPGQAGAPGQDGESGSEGACDHCPPPRTAP 314
>Z73427-5|CAA97803.1| 917|Caenorhabditis elegans Hypothetical
protein F58B3.5 protein.
Length = 917
Score = 27.1 bits (57), Expect = 5.7
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Frame = -1
Query: 399 KMSKRGRGGSAGAKF--RISLG---LPVGAVINCADNTGAKNLYV 280
K K+G+GG+A A I +G + VG +I C + A LYV
Sbjct: 737 KEQKKGKGGAAAAPVDDTIDVGRLDMRVGRIIKCEKHPDADALYV 781
>X51623-1|CAA35955.1| 316|Caenorhabditis elegans collagen protein.
Length = 316
Score = 27.1 bits (57), Expect = 5.7
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = -3
Query: 355 PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 251
P PG+P + + G E CD CP + +P
Sbjct: 280 PGAPGAPGQAGAPGQDGESGSEGACDHCPPPRTAP 314
>X51622-1|CAA35954.1| 316|Caenorhabditis elegans collagen protein.
Length = 316
Score = 27.1 bits (57), Expect = 5.7
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = -3
Query: 355 PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 251
P PG+P + + G E CD CP + +P
Sbjct: 280 PGAPGAPGQAGAPGQDGESGSEGACDHCPPPRTAP 314
>U80440-3|AAK21470.2| 380|Caenorhabditis elegans Hypothetical
protein T21E12.2 protein.
Length = 380
Score = 26.6 bits (56), Expect = 7.5
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 10 HRISTFFGYRPCDGRALHFALVIDYDTRIVL 102
H++S FF Y +GR + F + DT +++
Sbjct: 83 HKVSDFFVYLKTEGRTIGFNTLSSRDTSLLI 113
>AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical
protein Y51H4A.9 protein.
Length = 351
Score = 26.6 bits (56), Expect = 7.5
Identities = 11/35 (31%), Positives = 14/35 (40%)
Frame = -3
Query: 355 PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 251
P PG+P G E CD CP + +P
Sbjct: 315 PGQPGAPGQQGEPGEDGESGSEGACDHCPPPRTAP 349
>Z78064-2|CAB01508.2| 317|Caenorhabditis elegans Hypothetical
protein F57B1.4 protein.
Length = 317
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = -3
Query: 355 PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 251
P PG P + + G E CD CP + +P
Sbjct: 281 PGAPGQPGQAGAPGQDGDSGSEGACDHCPPPRTAP 315
>Z78064-1|CAB01509.1| 313|Caenorhabditis elegans Hypothetical
protein F57B1.3 protein.
Length = 313
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = -3
Query: 355 PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 251
P PG P + + G E CD CP + +P
Sbjct: 277 PGAPGQPGQAGAPGQDGDSGSEGACDHCPPPRTAP 311
>Z78012-6|CAB01416.1| 480|Caenorhabditis elegans Hypothetical
protein C52E4.6a protein.
Length = 480
Score = 26.2 bits (55), Expect = 10.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 89 PALSSKYINTPSRLLNGFRCLMTTAG 166
PA+ YINT ++N R ++ T G
Sbjct: 203 PAVDMNYINTKQHMINSERRILATLG 228
>X74228-1|CAA52299.1| 491|Caenorhabditis elegans pha-1 protein.
Length = 491
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 365 PAEPPRPLLDILLYQNFEKK 424
P E PL+D L +NFEKK
Sbjct: 433 PEEVDAPLIDSFLRENFEKK 452
>X73845-1|CAA52066.1| 491|Caenorhabditis elegans pha1 protein.
Length = 491
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 365 PAEPPRPLLDILLYQNFEKK 424
P E PL+D L +NFEKK
Sbjct: 433 PEEVDAPLIDSFLRENFEKK 452
>AY557405-1|AAS64750.1| 480|Caenorhabditis elegans cyclin L
protein.
Length = 480
Score = 26.2 bits (55), Expect = 10.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 89 PALSSKYINTPSRLLNGFRCLMTTAG 166
PA+ YINT ++N R ++ T G
Sbjct: 203 PAVDMNYINTKQHMINSERRILATLG 228
>AL032642-5|CAD91711.1| 453|Caenorhabditis elegans Hypothetical
protein Y48A6C.5b protein.
Length = 453
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 365 PAEPPRPLLDILLYQNFEKK 424
P E PL+D L +NFEKK
Sbjct: 395 PEEVDAPLIDSFLRENFEKK 414
>AL032642-4|CAA21655.1| 491|Caenorhabditis elegans Hypothetical
protein Y48A6C.5a protein.
Length = 491
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 365 PAEPPRPLLDILLYQNFEKK 424
P E PL+D L +NFEKK
Sbjct: 433 PEEVDAPLIDSFLRENFEKK 452
>AL023835-10|CAA19494.2| 691|Caenorhabditis elegans Hypothetical
protein Y37A1B.11 protein.
Length = 691
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 235 RRQSVQATFDTLDSDHIQILCPCVVGAVDYCSH 333
+ S++ +FDTLD ++ L C AV++ +H
Sbjct: 126 KMSSMECSFDTLDEKLVKALDECYHVAVEHNTH 158
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,078,727
Number of Sequences: 27780
Number of extensions: 244459
Number of successful extensions: 687
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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