Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12m02r
         (361 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c...    44   7e-06
SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch...    25   4.7  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   4.7  
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    25   4.7  
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    24   6.2  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    24   8.2  

>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 680

 Score = 44.0 bits (99), Expect = 7e-06
 Identities = 31/101 (30%), Positives = 45/101 (44%)
 Frame = -2

Query: 351 DGLDIKLKNRVKTYSARGAVRRLVQRPHAASWALHRYXXXXXXXXXXXXXXXXXXAPPAP 172
           D L++  K+R    S  G  R+L+ RP    +   +Y                  +    
Sbjct: 573 DPLNMSRKDR--ELSLPGDYRKLLVRPENMEFNFIKYDNMEQQLILTDKDRLENRSISVS 630

Query: 171 QEDGKYEALLLTMTLPPSCYATMMLRELMKTDTSSRAQALL 49
            E GK+ A+ L   LP S YATM LRE ++T T+S  Q +L
Sbjct: 631 SEVGKHTAVTLKFVLPSSAYATMALREALRTATASGDQRML 671


>SPBC1773.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +1

Query: 100 HHCGVATGWQCHC 138
           HHCG + G  C C
Sbjct: 350 HHCGQSLGCNCEC 362


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 15  GRGTPSSSA-DERVGPEPSTRCPSSSVRATSL 107
           G   P+ SA +  V P PS + PS++  ATSL
Sbjct: 152 GVNAPTVSAPNSMVSPPPSFQPPSAAAPATSL 183


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -2

Query: 135 MTLPPSCYATMMLRELMKTDTSSRAQALLSHPLKRTASPDP 13
           + LP S  A +    L KTD     +  ++ PLK T  P P
Sbjct: 517 LVLPNSLSANIQNDVLRKTDFMCTDKENVAFPLKTTTKPMP 557


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 24  TPSSSADERVGPEPSTRCPSSSVRAT 101
           TP+SS   R   +P+T  PS+S  +T
Sbjct: 12  TPTSSIPLRQMSQPTTSAPSNSASST 37


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 120 SCYATMMLRELMKTDTSSRAQALLSHP 40
           SC+ +      +KT  + R+Q  LSHP
Sbjct: 27  SCFKSFTYENDLKTFKALRSQLCLSHP 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,088,285
Number of Sequences: 5004
Number of extensions: 14636
Number of successful extensions: 41
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)