Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12m02r
(361 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74037-1|CAA98492.1| 510|Caenorhabditis elegans Hypothetical pr... 28 1.7
Z71178-9|CAA94883.1| 577|Caenorhabditis elegans Hypothetical pr... 27 5.2
AF047651-5|AAC02722.2| 702|Caenorhabditis elegans Germline-enha... 27 5.2
AC006676-3|AAK71381.3| 157|Caenorhabditis elegans Hypothetical ... 27 5.2
Z92973-4|CAE18004.2| 328|Caenorhabditis elegans Hypothetical pr... 26 9.1
Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical pr... 26 9.1
Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical p... 26 9.1
AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical ... 26 9.1
AC024214-5|AAF36077.2| 605|Caenorhabditis elegans Hypothetical ... 26 9.1
AC024214-4|AAM97985.2| 603|Caenorhabditis elegans Hypothetical ... 26 9.1
AC024214-3|AAU05554.1| 577|Caenorhabditis elegans Hypothetical ... 26 9.1
>Z74037-1|CAA98492.1| 510|Caenorhabditis elegans Hypothetical
protein F57B7.1a protein.
Length = 510
Score = 28.3 bits (60), Expect = 1.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 115 LRHNDVARTDEDGHLVEGSGPTLSSAEEDGV 23
+R + TDE HL+ SGP S+A DG+
Sbjct: 474 IRSGEDESTDETSHLLNSSGPN-STASADGI 503
>Z71178-9|CAA94883.1| 577|Caenorhabditis elegans Hypothetical
protein B0024.11 protein.
Length = 577
Score = 26.6 bits (56), Expect = 5.2
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -2
Query: 180 PAPQEDGKYEALLLTMTLPPSCYATMMLRELMKTDTSSRA 61
P ++ G AL + +L YAT+ LRE+ +D +A
Sbjct: 500 PEAEQKGPLLALQIQFSLISGSYATVALREVTGSDMGKKA 539
>AF047651-5|AAC02722.2| 702|Caenorhabditis elegans
Germline-enhanced at-hook proteinprotein 1 protein.
Length = 702
Score = 26.6 bits (56), Expect = 5.2
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 3 RPREGRGTPSSSADERVGPEPSTRCPSSSV 92
R REG PSSSA VG P+T+ ++V
Sbjct: 521 RNREGSDGPSSSAARPVGRPPTTQPVETAV 550
>AC006676-3|AAK71381.3| 157|Caenorhabditis elegans Hypothetical
protein M04F3.2 protein.
Length = 157
Score = 26.6 bits (56), Expect = 5.2
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 265 SVRPLHQPPHGAARAV 312
++RP QPPHG A AV
Sbjct: 21 TIRPFLQPPHGPASAV 36
>Z92973-4|CAE18004.2| 328|Caenorhabditis elegans Hypothetical
protein Y6G8.4 protein.
Length = 328
Score = 25.8 bits (54), Expect = 9.1
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 305 ALYVLTRFFNLMSNPSFSK 361
++ +LT F N++SNPSF K
Sbjct: 77 SVILLTFFSNILSNPSFEK 95
>Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical
protein T22H6.6a protein.
Length = 1405
Score = 25.8 bits (54), Expect = 9.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 18 RGTPSSSADERVGPEPSTRCPSSS 89
RG+P SS + PEP+ PSS+
Sbjct: 504 RGSPGSSKSDIFHPEPTVFLPSST 527
>Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical
protein T22H6.6a protein.
Length = 1405
Score = 25.8 bits (54), Expect = 9.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 18 RGTPSSSADERVGPEPSTRCPSSS 89
RG+P SS + PEP+ PSS+
Sbjct: 504 RGSPGSSKSDIFHPEPTVFLPSST 527
>AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical
protein F53H1.4a protein.
Length = 1370
Score = 25.8 bits (54), Expect = 9.1
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -1
Query: 127 ATQLLRHNDVARTDEDGHLVEGSGPTLSSAEEDGVPRPSRGR 2
A + LR + DE+ H GSG + EED V +RGR
Sbjct: 1181 AKEDLRQKEEGGGDEEDH--HGSGESDDEDEEDIVEEETRGR 1220
>AC024214-5|AAF36077.2| 605|Caenorhabditis elegans Hypothetical
protein Y77E11A.7a protein.
Length = 605
Score = 25.8 bits (54), Expect = 9.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 281 TSRRTAPRALYVLTRFFNLMSN 346
TSRRTA A YVL +++ M N
Sbjct: 251 TSRRTAETAHYVLNWYYSNMEN 272
>AC024214-4|AAM97985.2| 603|Caenorhabditis elegans Hypothetical
protein Y77E11A.7b protein.
Length = 603
Score = 25.8 bits (54), Expect = 9.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 281 TSRRTAPRALYVLTRFFNLMSN 346
TSRRTA A YVL +++ M N
Sbjct: 249 TSRRTAETAHYVLNWYYSNMEN 270
>AC024214-3|AAU05554.1| 577|Caenorhabditis elegans Hypothetical
protein Y77E11A.7c protein.
Length = 577
Score = 25.8 bits (54), Expect = 9.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 281 TSRRTAPRALYVLTRFFNLMSN 346
TSRRTA A YVL +++ M N
Sbjct: 223 TSRRTAETAHYVLNWYYSNMEN 244
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,493,667
Number of Sequences: 27780
Number of extensions: 96610
Number of successful extensions: 420
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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