Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12m02r
         (361 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          25   0.27 
AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    21   4.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   5.9  

>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 25.0 bits (52), Expect = 0.27
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -2

Query: 138 TMTLPPSCYATMMLRELMKTDTSSRAQALLSHPLK 34
           T  LPP    T M+  L +T TS   + LL H  K
Sbjct: 98  TRKLPPLHPHTAMVTHLPQTLTSENVEILLEHSSK 132


>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 6/25 (24%), Positives = 13/25 (52%)
 Frame = +3

Query: 45  ERVGPEPSTRCPSSSVRATSLWRSN 119
           E++  E +  CP   ++   +WR +
Sbjct: 93  EKISNELNEMCPLEKLKERRIWRDD 117


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 45  HPLKRTASPDPP 10
           H  K+ ASP+PP
Sbjct: 345 HVAKQMASPEPP 356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,881
Number of Sequences: 438
Number of extensions: 1145
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8432340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)